Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019841

Physical Location & Seq

Genomic Coordinates Reverse (-)

45965765 .. 45993883

Gene Structure 28119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG365700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTCGATTCTACATCTGCAACCGGAGAGTGTCTCTCTCGCCATTGCCGAACAGGCTCACAAGCAAATTCGAAAGTCCAGAGAGCTTCATCTGCGCCTGAAGAGTTGAGATCTTATCAAGGAGGATCGATTCAGCTCTTGCAGGATCCGAAGCACCATACAAATTCAAAGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCCTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGGAGTACGAGAAAAGTCGTCAGGTTGACGAGAGAGTTAGAAAGATTATTGAGTTGAAAAATAAGGTTTGTTCTGGTAATGACAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATATGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTCGAAAATGTGAACAACCCTCATTCTTGCACAATCTTAATCAAAGGTATTCAACATTGCTTGCATAAGTATTGCTTGAATCTAAAGATGATGGATAAAGAGTGGGTGTGGCTTCCCAGTATGCATTTGGAGGAGTTGCAAGCAAAAGACAAACGACTTGCAAATAATGAAACCTTACTTTGGAACTGGCATACCGAGAGATTTGCAGAATGGACAAAAAACAAGGTTACTTGCAATCCACCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

273

Amino Acids

31.06

Weight (kDa)

8.29

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	55 - 208	7.3e-41	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019841)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314091
rosa_multiflora	Rmu_sc0013705.1_g000001
rosa_samantha	Rh1AG008600 Rh2AG481300 Rh2CG467700 Rh3CG365700 Rh6AG127200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	133, 140, 153, 374
AcsI	RAATTY	2 cut(s)	67, 163
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	269, 566
AfiI	CCNNNNNNNGG	3 cut(s)	391, 523, 753
AgsI	TTSAA	4 cut(s)	168, 319, 626, 652
AjiI	CACGTC	1 cut(s)	547
AluBI	AGCT	2 cut(s)	86, 136
AluI	AGCT	2 cut(s)	86, 136
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	4 cut(s)	133, 140, 153, 374
ApoI	RAATTY	2 cut(s)	67, 163
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	2 cut(s)	394, 658
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	492
BglI	GCCNNNNNGGC	1 cut(s)	54
BglII	AGATCT	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	684
BplI	GAGNNNNNCTC	4 cut(s)	18, 50, 20, 52
BpmI	CTGGAG	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	517, 550
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 523, 753
Bse1I	ACTGG	2 cut(s)	690, 764
Bse3DI	GCAATG	2 cut(s)	43, 628
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	517, 550
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	3 cut(s)	391, 523, 753
BseMI	GCAATG	2 cut(s)	43, 628
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	690, 764
BseRI	GAGGAG	2 cut(s)	454, 719
BseYI	CCCAGC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	391, 523, 753
BsmAI	GTCTC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	5 cut(s)	110, 125, 145, 190, 379
BspCNI	CTCAG	1 cut(s)	417
BspDI	ATCGAT	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	133, 140, 153, 374
BspQI	GCTCTTC	1 cut(s)	424
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	43, 628
BsrI	ACTGG	2 cut(s)	690, 764
BssECI	CCNNGG	2 cut(s)	517, 550
BssMI	GATC	5 cut(s)	110, 125, 145, 190, 379
BssT1I	CCWWGG	2 cut(s)	517, 550
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	3 cut(s)	96, 424, 552
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	635, 714
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	113, 128, 148, 193, 382
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	5 cut(s)	110, 125, 145, 190, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 92
BstSFI	CTRYAG	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	110, 145
BstYI	RGATCY	2 cut(s)	110, 145
Bsu15I	ATCGAT	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	635, 714
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	268, 565
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	8 cut(s)	57, 86, 136, 251, 467, 522, 527, 685
CviKI_1	RGCY	8 cut(s)	57, 86, 136, 251, 467, 522, 527, 685
CviQI	GTAC	2 cut(s)	268, 565
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	5 cut(s)	112, 127, 147, 192, 381
DpnII	GATC	5 cut(s)	110, 125, 145, 190, 379
Eam1104I	CTCTTC	3 cut(s)	96, 424, 552
EarI	CTCTTC	3 cut(s)	96, 424, 552
Eco130I	CCWWGG	2 cut(s)	517, 550
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	517, 550
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	517, 550
FaeI	CATG	1 cut(s)	197
FaiI	YATR	9 cut(s)	159, 195, 215, 449, 538, 540, 639, 695, 765
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	190
FokI	GGATG	1 cut(s)	192
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	526
GsuI	CTGGAG	1 cut(s)	284
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	8, 130, 652
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	4 cut(s)	289, 487, 567, 586
Hpy188I	TCNGA	3 cut(s)	150, 369, 426
Hpy188III	TCNNGA	6 cut(s)	79, 209, 244, 263, 392, 509
Hpy8I	GTNNAC	4 cut(s)	289, 487, 567, 586
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	364, 407
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	9 cut(s)	20, 142, 603, 637, 697, 712, 734, 779, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 92
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	110, 125, 145, 190, 379
LguI	GCTCTTC	1 cut(s)	424
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	236, 799
MalI	GATC	5 cut(s)	112, 127, 147, 192, 381
MboI	GATC	5 cut(s)	110, 125, 145, 190, 379
MboII	GAAGA	3 cut(s)	113, 441, 569
MflI	RGATCY	2 cut(s)	110, 145
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	5 cut(s)	67, 163, 232, 349, 375
MnlI	CCTC	7 cut(s)	116, 169, 432, 467, 472, 603, 697
Mph1103I	ATGCAT	1 cut(s)	699
MseI	TTAA	3 cut(s)	503, 611, 820
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	54, 92
NdeII	GATC	5 cut(s)	110, 125, 145, 190, 379
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	699
NspV	TTCGAA	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	8, 130, 652
PspFI	CCCAGC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	110, 145
RsaI	GTAC	2 cut(s)	269, 566
RsaNI	GTAC	2 cut(s)	268, 565
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	503, 611, 820
Sau3AI	GATC	5 cut(s)	110, 125, 145, 190, 379
Sau96I	GGNCC	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	394
Sse9I	AATT	5 cut(s)	67, 163, 232, 349, 375
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	517, 550
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	6, 71, 128, 576
TasI	AATT	5 cut(s)	67, 163, 232, 349, 375
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	3 cut(s)	8, 130, 652
Tru1I	TTAA	3 cut(s)	503, 611, 820
Tru9I	TTAA	3 cut(s)	503, 611, 820
TscAI	CASTG	1 cut(s)	489
TspDTI	ATGAA	3 cut(s)	78, 230, 756
TspRI	CASTG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	2 cut(s)	67, 163
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 697
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.