Rh6AG127200
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019841
Physical Location & Seq
Reverse (-)
19226146 .. 19228164
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG127200.1

Sequence Viewer

Length: 534 bp
ATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGTTACATGAAGCATTGGCTGATCAATTGACTGACATATTTGTTGATGAGAGAGTTAGAAAGATTATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGACAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAACAAAAAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGTTGGACTTGTATATGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTCAAAAATGTGAAGAACCCTCATTCTTGCACAATCTTAATCAAAGGTATTCAGTCAGTAGCTCCATCCAAATTGCAAATTTCTATATACAATTTTGTTCTCTATCCATGTCTCGATATATATCTTGCATCCCTGTCATGGTAA

Protein Analysis

177

Amino Acids

19.84

Weight (kDa)

8.25

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 34 - 153 1.1e-32 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019841)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314091
rosa_multiflora Rmu_sc0013705.1_g000001
rosa_samantha Rh1AG008600 Rh2AG481300 Rh2CG467700 Rh3CG365700 Rh6AG127200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 468
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 4 cut(s) 34, 208, 340, 528
AjiI CACGTC 1 cut(s) 364
AluBI AGCT 2 cut(s) 133, 452
AluI AGCT 2 cut(s) 133, 452
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 468
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 2 cut(s) 211, 463
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 334, 367
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 208, 340, 528
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 334, 367
BseGI GGATG 2 cut(s) 455, 518
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 4 cut(s) 34, 208, 340, 528
BseMII CTCAG 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 363
BslI CCNNNNNNNGG 4 cut(s) 34, 208, 340, 528
BsmAI GTCTC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 82, 196
BspCNI CTCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 334, 367
BssMI GATC 2 cut(s) 82, 196
BssT1I CCWWGG 2 cut(s) 334, 367
Bst4CI ACNGT 2 cut(s) 52, 273
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 455, 518
BstKTI GATC 2 cut(s) 85, 199
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 2 cut(s) 82, 196
BstSFI CTRYAG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 455, 518
BtsI GCAGTG 2 cut(s) 13, 306
BtsIMutI CAGTG 2 cut(s) 13, 306
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 382
CviAII CATG 3 cut(s) 68, 498, 528
CviJI RGCY 6 cut(s) 13, 80, 133, 284, 339, 452
CviKI_1 RGCY 6 cut(s) 13, 80, 133, 284, 339, 452
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 84, 198
DpnII GATC 2 cut(s) 82, 196
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 334, 367
Eco47I GGWCC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 334, 367
ErhI CCWWGG 2 cut(s) 334, 367
FaeI CATG 3 cut(s) 71, 501, 531
FatI CATG 3 cut(s) 67, 497, 527
FbaI TGATCA 1 cut(s) 82
FokI GGATG 2 cut(s) 442, 505
GsaI CCCAGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 71, 501, 531
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 304, 384
Hpy188I TCNGA 2 cut(s) 186, 243
Hpy188III TCNNGA 3 cut(s) 209, 326, 503
Hpy8I GTNNAC 2 cut(s) 304, 384
HpyAV CCTTC 2 cut(s) 181, 224
HpyCH4III ACNGT 2 cut(s) 52, 273
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 420, 466, 518
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 71, 501, 531
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 82, 196
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 7 cut(s) 27, 138, 194, 203, 213, 325, 339
LweI GCATC 1 cut(s) 527
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 63
MalI GATC 2 cut(s) 84, 198
MboI GATC 2 cut(s) 82, 196
MboII GAAGA 3 cut(s) 258, 386, 415
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 6 cut(s) 86, 166, 192, 461, 468, 481
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 3 cut(s) 284, 289, 420
MseI TTAA 2 cut(s) 320, 428
MunI CAATTG 1 cut(s) 86
NdeII GATC 2 cut(s) 82, 196
NlaIII CATG 3 cut(s) 71, 501, 531
PspFI CCCAGC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 211
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 320, 428
Sau3AI GATC 2 cut(s) 82, 196
Sau96I GGNCC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 363
SetI ASST 6 cut(s) 135, 147, 216, 366, 439, 454
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 211
Sse9I AATT 6 cut(s) 86, 166, 192, 461, 468, 481
StyI CCWWGG 2 cut(s) 334, 367
TaaI ACNGT 2 cut(s) 52, 273
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 504
TasI AATT 6 cut(s) 86, 166, 192, 461, 468, 481
TatI WGTACW 1 cut(s) 381
Tru1I TTAA 2 cut(s) 320, 428
Tru9I TTAA 2 cut(s) 320, 428
TscAI CASTG 2 cut(s) 13, 306
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 2 cut(s) 13, 306
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.