Rh2CG467700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019841
Physical Location & Seq
Forward (+)
63131371 .. 63133748
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG467700.1

Sequence Viewer

Length: 366 bp
ATGCAAAACATCAACTATAGTACTGGACCAAACCATCAAATCATTTCCACATTCATTGGAGGAGAAGTTGGCAAACCCGATCCGAACCCAAATGTATATGGTCGTCTCTCTCTATTTCTTACCCAACCCGAACCCAATCCAAATCCCAAATCCTCTCCACCCGCGACTCCCTCCTCTCCCACCAAATCACAGCCGCCGAGCTCGCCGAGTCCTTCCTCTCCCGCCTCCGCCGCACCCAGCCCCACCTCCGCTCCTTCTTCCACGTCTCCGACGCAGTCCTCGCCCAGGCCAGCGACCTCGATGACAGGCTTCGCCGGAATGAGGAGATGGGACCTTGGCCGGGGTCCTTATAGCGGTGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.46

Weight (kDa)

9.69

Isoelectric Point (pI)

85.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019841)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314091
rosa_multiflora Rmu_sc0013705.1_g000001
rosa_samantha Rh1AG008600 Rh2AG481300 Rh2CG467700 Rh3CG365700 Rh6AG127200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 251
AccII CGCG 1 cut(s) 164
AciI CCGC 7 cut(s) 162, 194, 222, 228, 231, 249, 354
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 337
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 4 cut(s) 285, 321, 340, 353
AjiI CACGTC 1 cut(s) 264
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 110, 270
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 287, 337
AspS9I GGNCC 3 cut(s) 26, 331, 344
AsuC2I CCSGG 1 cut(s) 341
AvaII GGWCC 3 cut(s) 26, 331, 344
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 2 cut(s) 42, 321
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 110, 270
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 194, 231
BlsI GCNGC 2 cut(s) 195, 232
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 286, 341
Bme18I GGWCC 3 cut(s) 26, 331, 344
BmgBI CACGTC 1 cut(s) 264
BmgT120I GGNCC 3 cut(s) 26, 331, 344
BmiI GGNNCC 2 cut(s) 332, 345
BmrFI CCNGG 2 cut(s) 286, 341
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 284, 334, 340
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 235, 265
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 321, 340, 353
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 284, 334, 340
BseLI CCNNNNNNNGG 4 cut(s) 285, 321, 340, 353
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 3 cut(s) 75, 163, 337
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 289, 339
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 315, 340
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 285, 321, 340, 353
BsmAI GTCTC 2 cut(s) 110, 270
BsmBI CGTCTC 2 cut(s) 110, 270
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 289, 339
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 7 cut(s) 162, 194, 222, 228, 231, 249, 354
BspANI GGCC 2 cut(s) 289, 339
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 332, 345
BspPI GGATC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 284, 334, 340
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 203, 291
BstENI CCTNNNNNAGG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 110, 270
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 202, 230, 280
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 284, 339
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 289, 339
BtrI CACGTC 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 203, 291
Cfr13I GGNCC 3 cut(s) 26, 331, 344
CseI GACGC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 21
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviJI RGCY 6 cut(s) 193, 201, 240, 289, 309, 339
CviKI_1 RGCY 6 cut(s) 193, 201, 240, 289, 309, 339
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 337
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 3 cut(s) 26, 331, 344
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoO109I RGGNCCY 2 cut(s) 331, 344
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 2 cut(s) 110, 270
FaiI YATR 4 cut(s) 18, 97, 99, 351
FaqI GGGAC 1 cut(s) 344
FauI CCCGC 2 cut(s) 169, 229
Fnu4HI GCNGC 2 cut(s) 194, 231
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 194, 231
GluI GCNGC 2 cut(s) 194, 231
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 289, 339
HapII CCGG 2 cut(s) 315, 340
HgaI GACGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 166, 208
HpaII CCGG 2 cut(s) 315, 340
Hpy188I TCNGA 2 cut(s) 84, 270
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 3 cut(s) 222, 264, 353
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 230, 280
HpySE526I ACGT 1 cut(s) 263
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 9, 250, 271, 291, 298, 303, 328, 353
MaeII ACGT 1 cut(s) 263
MalI GATC 1 cut(s) 81
MbiI CCGCTC 1 cut(s) 251
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 203
MlyI GAGTC 2 cut(s) 160, 217
MmeI TCCRAC 1 cut(s) 293
MspI CCGG 2 cut(s) 315, 340
MspR9I CCNGG 2 cut(s) 286, 341
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 202, 230, 280
NciI CCSGG 1 cut(s) 341
NdeII GATC 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 332, 345
NmeAIII GCCGAG 2 cut(s) 222, 231
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 195, 232
PleI GAGTC 2 cut(s) 160, 216
PpsI GAGTC 2 cut(s) 160, 216
PpuMI RGGWCCY 2 cut(s) 331, 344
Psp124BI GAGCTC 1 cut(s) 203
Psp5II RGGWCCY 2 cut(s) 331, 344
Psp6I CCWGG 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 332, 345
PspPI GGNCC 3 cut(s) 26, 331, 344
PspPPI RGGWCCY 2 cut(s) 331, 344
PsyI GACNNNGTC 1 cut(s) 274
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SacI GAGCTC 1 cut(s) 203
SatI GCNGC 2 cut(s) 194, 231
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 3 cut(s) 26, 331, 344
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 2 cut(s) 160, 217
ScrFI CCNGG 2 cut(s) 286, 341
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 203, 248, 266, 299, 336
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 3 cut(s) 26, 331, 344
SsiI CCGC 7 cut(s) 162, 194, 222, 228, 231, 249, 354
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 284, 339
StyI CCWWGG 1 cut(s) 334
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 299
TatI WGTACW 1 cut(s) 20
TauI GCSGC 2 cut(s) 196, 233
TspDTI ATGAA 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 26, 331, 344
XagI CCTNNNNNAGG 1 cut(s) 283
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.