RchiOBHm_Chr1g0315681

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
2718211 .. 2718369
159 bp
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UTR
Exon/CDS
Intron
PRQ54618

Sequence Viewer

Length: 159 bp
ATGACGACGAATGAGGTGAAGTTCTCGGAGGCGATGAGCTCGATGCCGCGGCAGTGGCGACACTTCTCCTTCTCGATCAGGTCATGGATCTATGGGTCCATGGTCTCTAGGTTGGTGTTCCCCCAAGCGATTATGAGAGGAGAGAATGGGGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.16

Weight (kDa)

10.74

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019335)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 2 cut(s) 47, 49
AclWI GGATC 1 cut(s) 95
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 47, 50
BlsI GCNGC 2 cut(s) 48, 51
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 47, 99
BseDI CCNNGG 2 cut(s) 47, 99
BseRI GAGGAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 75, 87
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 47, 49
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 47, 99
BssMI GATC 2 cut(s) 75, 87
BssT1I CCWWGG 1 cut(s) 99
BstDSI CCRYGG 2 cut(s) 47, 99
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 78, 90
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 75, 87
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstUI CGCG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 47, 99
BtgZI GCGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 96
Cfr42I CCGCGG 1 cut(s) 50
CviAII CATG 2 cut(s) 84, 100
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 2 cut(s) 77, 89
DpnII GATC 2 cut(s) 75, 87
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 87, 103
FaiI YATR 4 cut(s) 85, 93, 101, 134
FatI CATG 2 cut(s) 83, 99
Fnu4HI GCNGC 2 cut(s) 47, 50
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 47, 50
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 47, 50
Hin1II CATG 2 cut(s) 87, 103
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
Hsp92II CATG 2 cut(s) 87, 103
KspI CCGCGG 1 cut(s) 50
Kzo9I GATC 2 cut(s) 75, 87
LpnPI CCDG 1 cut(s) 64
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 77, 89
MboI GATC 2 cut(s) 75, 87
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 41
MnlI CCTC 3 cut(s) 7, 22, 131
MspA1I CMGCKG 1 cut(s) 49
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 55
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 75, 87
NlaIII CATG 2 cut(s) 87, 103
NlaIV GGNNCC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 48, 51
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 87
SacI GAGCTC 1 cut(s) 41
SacII CCGCGG 1 cut(s) 50
SatI GCNGC 2 cut(s) 47, 50
Sau3AI GATC 2 cut(s) 75, 87
Sau96I GGNCC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 18, 41, 83, 113
SfaNI GCATC 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 50
SgeI CNNG 9 cut(s) 37, 52, 60, 85, 91, 96, 112, 120, 137
SgrBI CCGCGG 1 cut(s) 50
SinI GGWCC 1 cut(s) 96
SsiI CCGC 2 cut(s) 47, 49
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 2 cut(s) 41, 74
TauI GCSGC 2 cut(s) 49, 52
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 96
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.