Rh4AG009300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019335
Physical Location & Seq
Forward (+)
1573019 .. 1573198
180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG009300.1

Sequence Viewer

Length: 180 bp
ATGACGGCGAAGGAGGTGAAGTTCTCGGAGGCGATGAGCTCGATGCCACGGCAGTGGCGACGCTTTTCCTTCTCGATCAGGTCGTGGATCTATGGGTCCATGGTCTCCAGGTTGGTGTTCCCCCAAGCGTTTACTGCCTCCATTGGAGAGAATGGGCCGAGAGAGATGAAGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.89

Weight (kDa)

11.0

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019335)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315681 RchiOBHm_Chr1g0342351 RchiOBHm_Chr4g0426241 RchiOBHm_Chr5g0070581
rosa_multiflora Rmu_sc0003207.1_g000005
rosa_rugosa Rorug01G0175300
rosa_samantha Rh4AG009300
rosa_wichuraiana Rw1G025910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 52
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 96, 155
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 21, 65
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 96, 155
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 47, 99
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 47, 99
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 75, 87
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 47, 99
BssMI GATC 2 cut(s) 75, 87
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 109
BstDSI CCRYGG 2 cut(s) 47, 99
BstKTI GATC 2 cut(s) 78, 90
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 75, 87
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 54
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 2 cut(s) 47, 99
BtgZI GCGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 96, 155
CseI GACGC 1 cut(s) 69
CviAII CATG 1 cut(s) 100
CviJI RGCY 2 cut(s) 39, 157
CviKI_1 RGCY 2 cut(s) 39, 157
DpnI GATC 2 cut(s) 77, 89
DpnII GATC 2 cut(s) 75, 87
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 103
FaiI YATR 2 cut(s) 93, 101
FatI CATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 1 cut(s) 157
HgaI GACGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 103
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 4, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 75, 87
LpnPI CCDG 3 cut(s) 64, 94, 121
LweI GCATC 1 cut(s) 33
MalI GATC 2 cut(s) 77, 89
MboI GATC 2 cut(s) 75, 87
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 41
MnlI CCTC 3 cut(s) 7, 22, 148
MslI CAYNNNNRTG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 75, 87
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 80
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 96, 155
PsuI RGATCY 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 52
SacI GAGCTC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 75, 87
Sau96I GGNCC 2 cut(s) 96, 155
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 18, 41, 83, 113
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 52
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 2 cut(s) 41, 74
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.