RchiOBHm_Chr1g0342351

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
34262801 .. 34262965
165 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56898

Sequence Viewer

Length: 165 bp
ATGACGTCGAAGGAGGTGAAGTTCTCGGAGGCGATAAGCTCGATGTCGCGGCAGTGGCGACGCTTCTCCTTCTCAATCAGGTCGTGGATCTATGGGTCCATGATCTCCAGGTTGGTGTTCCCCCAAGCGTTTACTGCCTCCATTGGAGAGAATGGGGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.28

Weight (kDa)

10.83

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019335)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 5
AjnI CCWGG 1 cut(s) 107
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 109
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
BseBI CCWGG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 49
Bsp143I GATC 2 cut(s) 87, 102
BspACI CCGC 1 cut(s) 49
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 95
BssMI GATC 2 cut(s) 87, 102
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 5
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 90, 105
BstMBI GATC 2 cut(s) 87, 102
BstMWI GCNNNNNNNGC 2 cut(s) 55, 134
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstUI CGCG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 69
CviAII CATG 1 cut(s) 100
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 2 cut(s) 89, 104
DpnII GATC 2 cut(s) 87, 102
Eco47I GGWCC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 103
FaiI YATR 2 cut(s) 93, 101
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 91
HgaI GACGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 103
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 2 cut(s) 10, 63
HpyAV CCTTC 2 cut(s) 4, 79
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 134
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 87, 102
LpnPI CCDG 3 cut(s) 64, 94, 121
MaeII ACGT 1 cut(s) 5
MalI GATC 2 cut(s) 89, 104
MboI GATC 2 cut(s) 87, 102
MflI RGATCY 1 cut(s) 87
MnlI CCTC 3 cut(s) 7, 22, 148
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 55, 134
NdeII GATC 2 cut(s) 87, 102
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 87
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 87, 102
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 109
SetI ASST 5 cut(s) 8, 18, 41, 83, 113
SgeI CNNG 9 cut(s) 37, 52, 60, 91, 96, 112, 120, 121, 137
SinI GGWCC 1 cut(s) 96
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 8, 41
TauI GCSGC 1 cut(s) 52
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 96
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.