RchiOBHm_Chr5g0070581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019335
Physical Location & Seq
Forward (+)
76360495 .. 76360979
485 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34577

Sequence Viewer

Length: 414 bp
ATGACGGCGAAGGAGGCGATGAGCTCGATACCGTGGCAGTGGCGACATTTCTCCTTCTCTATCAGGTCGTGGATCTATGGGTCCATGGTCTCCAGGTTGGTGTTCCCCCAAACGATTACTGCCTCCATTGGAGAGAATGAGAGGAGAGAATGGGGAGAGATGAAGAAGATGAAAAATGGTTGTGGATTTACAGGCAAAGCTGGGAAACTGAATTTTAGGCCCGAAAAGCCCGAGGACCGAACCGACTCATTTGGGATCGGTTTCTGTCGGTTTTCATTTTTGAAAAAGCTCGAATCGACCCGAACCGATTGTTTCGGGCTCGGTCTCGGTTTTACCAAATTTCGGGCCCGACCCAACCCGAGCCCAGCCCTAATTCTCTCTGTCTTATTTTACACTATATTGTTAAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

10.02

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019335)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315681 RchiOBHm_Chr1g0342351 RchiOBHm_Chr4g0426241 RchiOBHm_Chr5g0070581
rosa_multiflora Rmu_sc0003207.1_g000005
rosa_rugosa Rorug01G0175300
rosa_samantha Rh4AG009300
rosa_wichuraiana Rw1G025910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 80, 263
AcsI RAATTY 2 cut(s) 211, 338
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 24, 200, 289
AluI AGCT 3 cut(s) 24, 200, 289
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 2 cut(s) 94, 329
AlwI GGATC 2 cut(s) 80, 263
Ama87I CYCGRG 2 cut(s) 230, 358
AoxI GGCC 2 cut(s) 218, 345
ApaI GGGCCC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 211, 338
AspS9I GGNCC 5 cut(s) 81, 219, 235, 345, 346
AvaI CYCGRG 2 cut(s) 230, 358
AvaII GGWCC 2 cut(s) 81, 235
BaeGI GKGCMC 1 cut(s) 349
BanII GRGCYC 4 cut(s) 26, 321, 349, 365
Bbv12I GWGCWC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 94, 329
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 81, 235
BmeT110I CYCGRG 2 cut(s) 230, 358
BmgT120I GGNCC 5 cut(s) 81, 219, 235, 345, 346
BmiI GGNNCC 2 cut(s) 82, 347
BmrFI CCNGG 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 76
BsaI GGTCTC 2 cut(s) 94, 329
BsaJI CCNNGG 3 cut(s) 32, 84, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 32, 84, 231
BseLI CCNNNNNNNGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 349
BseYI CCCAGC 2 cut(s) 200, 364
BshFI GGCC 2 cut(s) 220, 347
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 2 cut(s) 230, 358
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 94, 329
BsnI GGCC 2 cut(s) 220, 347
Bso31I GGTCTC 2 cut(s) 94, 329
BsoBI CYCGRG 2 cut(s) 230, 358
Bsp120I GGGCCC 1 cut(s) 345
Bsp1286I GDGCHC 4 cut(s) 26, 321, 349, 365
Bsp143I GATC 2 cut(s) 72, 255
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 2 cut(s) 220, 347
BspLI GGNNCC 2 cut(s) 82, 347
BspPI GGATC 2 cut(s) 80, 263
BspTNI GGTCTC 2 cut(s) 94, 329
BssECI CCNNGG 3 cut(s) 32, 84, 231
BssMI GATC 2 cut(s) 72, 255
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 32, 84
BstKTI GATC 2 cut(s) 75, 258
BstMAI GTCTC 2 cut(s) 94, 329
BstMBI GATC 2 cut(s) 72, 255
BstMWI GCNNNNNNNGC 2 cut(s) 14, 226
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 2 cut(s) 220, 347
BtgI CCRYGG 2 cut(s) 32, 84
BtgZI GCGATG 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cfr13I GGNCC 5 cut(s) 81, 219, 235, 345, 346
CviAII CATG 2 cut(s) 85, 411
CviJI RGCY 9 cut(s) 24, 200, 220, 229, 289, 319, 347, 363, 368
CviKI_1 RGCY 9 cut(s) 24, 200, 220, 229, 289, 319, 347, 363, 368
DpnI GATC 2 cut(s) 74, 257
DpnII GATC 2 cut(s) 72, 255
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 4 cut(s) 26, 321, 349, 365
Eco31I GGTCTC 2 cut(s) 94, 329
Eco47I GGWCC 2 cut(s) 81, 235
Eco53kI GAGCTC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 230, 358
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 4 cut(s) 26, 321, 349, 365
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 88, 414
FaiI YATR 4 cut(s) 78, 86, 398, 412
FatI CATG 2 cut(s) 84, 410
FriOI GRGCYC 4 cut(s) 26, 321, 349, 365
GsaI CCCAGC 2 cut(s) 204, 368
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 220, 347
Hin1II CATG 2 cut(s) 88, 414
HinfI GANTC 2 cut(s) 245, 293
HpyAV CCTTC 2 cut(s) 4, 64
HpyCH4III ACNGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 226
Hsp92II CATG 2 cut(s) 88, 414
Kzo9I GATC 2 cut(s) 72, 255
LpnPI CCDG 6 cut(s) 49, 79, 106, 177, 186, 378
MalI GATC 2 cut(s) 74, 257
MboI GATC 2 cut(s) 72, 255
MboII GAAGA 2 cut(s) 175, 178
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 4 cut(s) 26, 321, 349, 365
MluCI AATT 3 cut(s) 211, 338, 372
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 4 cut(s) 7, 133, 135, 226
MseI TTAA 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 14, 226
NcoI CCATGG 1 cut(s) 84
NdeII GATC 2 cut(s) 72, 255
NlaIII CATG 2 cut(s) 88, 414
NlaIV GGNNCC 2 cut(s) 82, 347
PfeI GAWTC 1 cut(s) 293
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 2 cut(s) 200, 364
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 82, 347
PspOMI GGGCCC 1 cut(s) 345
PspPI GGNCC 5 cut(s) 81, 219, 235, 345, 346
PsuI RGATCY 1 cut(s) 72
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 404
Sau3AI GATC 2 cut(s) 72, 255
Sau96I GGNCC 5 cut(s) 81, 219, 235, 345, 346
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 4 cut(s) 26, 321, 349, 365
SetI ASST 5 cut(s) 26, 68, 98, 202, 291
SinI GGWCC 2 cut(s) 81, 235
Sse9I AATT 3 cut(s) 211, 338, 372
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 26, 291, 296
TaqII GACCGA 2 cut(s) 252, 311
TasI AATT 3 cut(s) 211, 338, 372
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 176, 185, 264
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 81, 235
XapI RAATTY 2 cut(s) 211, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.