Rmu_sc0003207.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003207.1
OG0019335
Physical Location & Seq
Forward (+)
15274 .. 15714
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003207.1_g000005.1.cds

Sequence Viewer

Length: 441 bp
atgtcggtttccattttcgaaaaagcccgaaccgagtgtttcgggctcggtctcggttttaccaaatttcgggcccgaccctacccgagcccagccctagctccaagtggtgtagttgatttctgcaaggtcattccctccttggtttctgaggatgataattcagttttggtttctattcccactgcagaagagattcgacgtgttgttttctctatggacctttctagttctcctggtccagatggttttcccggctccttttaccaaagttgctgggatattgttggtaatgatgttattggctttgtgcaattctttttccaacaaaattggttatatccaaatgcgaattctaacttcattttgttaattccgaagacggaaggggcgaatatgatctctcagttcaggccaattgctttgatctgccttgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

146

Amino Acids

16.11

Weight (kDa)

4.7

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019335)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315681 RchiOBHm_Chr1g0342351 RchiOBHm_Chr4g0426241 RchiOBHm_Chr5g0070581
rosa_multiflora Rmu_sc0003207.1_g000005
rosa_rugosa Rorug01G0175300
rosa_samantha Rh4AG009300
rosa_wichuraiana Rw1G025910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 65, 352
AfiI CCNNNNNNNGG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 202
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 72, 413
ApaI GGGCCC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 65, 352
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 4 cut(s) 72, 73, 220, 239
AsuC2I CCSGG 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 2 cut(s) 220, 239
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 3 cut(s) 48, 76, 92
BbsI GAAGAC 1 cut(s) 386
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 98, 228
BfmI CTRYAG 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 237, 255
Bme18I GGWCC 2 cut(s) 220, 239
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 72, 73, 220, 239
BmiI GGNNCC 2 cut(s) 74, 259
BmrFI CCNGG 2 cut(s) 237, 255
BpiI GAAGAC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 141, 419
BseSI GKGCMC 1 cut(s) 76
BseYI CCCAGC 2 cut(s) 91, 276
BshFI GGCC 2 cut(s) 74, 415
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 74, 415
Bso31I GGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 18
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 48, 76, 92
Bsp143I GATC 2 cut(s) 399, 426
BspANI GGCC 2 cut(s) 74, 415
BspCNI CTCAG 2 cut(s) 142, 418
BspLI GGNNCC 2 cut(s) 74, 259
BspMAI CTGCAG 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 399, 426
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 150, 405
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 402, 429
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 399, 426
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 235, 253
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 386
BsuRI GGCC 2 cut(s) 74, 415
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 4 cut(s) 72, 73, 220, 239
CviJI RGCY 9 cut(s) 26, 46, 74, 90, 95, 101, 258, 306, 415
CviKI_1 RGCY 9 cut(s) 26, 46, 74, 90, 95, 101, 258, 306, 415
DdeI CTNAG 2 cut(s) 150, 405
DpnI GATC 2 cut(s) 401, 428
DpnII GATC 2 cut(s) 399, 426
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 3 cut(s) 48, 76, 92
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 220, 239
Eco88I CYCGRG 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 3 cut(s) 48, 76, 92
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 3 cut(s) 218, 340, 398
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 3 cut(s) 48, 76, 92
FspBI CTAG 2 cut(s) 98, 228
GsaI CCCAGC 2 cut(s) 95, 280
HaeIII GGCC 2 cut(s) 74, 415
HapII CCGG 1 cut(s) 255
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 151, 378
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 126, 188, 313
HpyF3I CTNAG 2 cut(s) 150, 405
HpySE526I ACGT 1 cut(s) 202
Kzo9I GATC 2 cut(s) 399, 426
LmnI GCTCC 2 cut(s) 106, 263
LpnPI CCDG 7 cut(s) 105, 222, 249, 255, 262, 268, 397
MaeI CTAG 2 cut(s) 98, 228
MaeII ACGT 1 cut(s) 202
MalI GATC 2 cut(s) 401, 428
MboI GATC 2 cut(s) 399, 426
MboII GAAGA 2 cut(s) 203, 391
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 48, 76, 92
MluCI AATT 7 cut(s) 65, 160, 314, 331, 352, 372, 417
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 145, 148
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 371, 439
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 237, 255
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 237
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 399, 426
NlaIV GGNNCC 2 cut(s) 74, 259
NspV TTCGAA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 2 cut(s) 91, 276
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 74, 259
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 72, 73, 220, 239
PstI CTGCAG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 371, 439
Sau3AI GATC 2 cut(s) 399, 426
Sau96I GGNCC 4 cut(s) 72, 73, 220, 239
ScrFI CCNGG 2 cut(s) 237, 255
SduI GDGCHC 3 cut(s) 48, 76, 92
SetI ASST 4 cut(s) 103, 132, 205, 225
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 18
SinI GGWCC 2 cut(s) 220, 239
Sse9I AATT 7 cut(s) 65, 160, 314, 331, 352, 372, 417
SspMI CTAG 2 cut(s) 98, 228
StyD4I CCNGG 2 cut(s) 235, 253
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 18, 199
TaqII GACCGA 1 cut(s) 38
TasI AATT 7 cut(s) 65, 160, 314, 331, 352, 372, 417
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 371, 439
Tru9I TTAA 2 cut(s) 371, 439
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 220, 239
XapI RAATTY 2 cut(s) 65, 352
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 98, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.