RchiOBHm_Chr4g0426241

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
51769615 .. 51769914
300 bp
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UTR
Exon/CDS
Intron
PRQ39530

Sequence Viewer

Length: 300 bp
ATGGTCTCCAGGTTGGTGTTCCCCCAAGCGATTACTGCCTCTATTGGAGAGAATGAGAGGAGAGAATGGGGAGAGATGAAGAAGAAGAAAAATGGTTGTGGATTTACAGGCAAAGCTGGGAAACTGAATTTTGGGCCCGAAAAGCCCGAGGACCAAACAGACTCATTTGTGATCAGTTTCTGGCGGTTTTCATTTTTGAAAAAGCTCGAACCGACCCGAACAGATTGTTTCGGGCTCGGTCTCGGTTTTACCAAATTTCGGGCCCGACCCAACCCAAGCCCAGCCTACAATATAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

9.8

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019335)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 127, 254
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 2 cut(s) 116, 205
AluI AGCT 2 cut(s) 116, 205
Alw26I GTCTC 2 cut(s) 10, 245
AlwNI CAGNNNCTG 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 2 cut(s) 134, 261
ApaI GGGCCC 2 cut(s) 138, 265
ApoI RAATTY 2 cut(s) 127, 254
AspS9I GGNCC 5 cut(s) 134, 135, 151, 261, 262
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 2 cut(s) 138, 265
BanII GRGCYC 3 cut(s) 138, 237, 265
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 10, 245
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 5 cut(s) 134, 135, 151, 261, 262
BmiI GGNNCC 2 cut(s) 136, 263
BmrFI CCNGG 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 10, 245
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 73
BseSI GKGCMC 2 cut(s) 138, 265
BseYI CCCAGC 2 cut(s) 116, 280
BshFI GGCC 2 cut(s) 136, 263
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 10, 245
BsnI GGCC 2 cut(s) 136, 263
Bso31I GGTCTC 2 cut(s) 10, 245
BsoBI CYCGRG 1 cut(s) 146
Bsp120I GGGCCC 2 cut(s) 134, 261
Bsp1286I GDGCHC 3 cut(s) 138, 237, 265
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 136, 263
BspLI GGNNCC 2 cut(s) 136, 263
BspTNI GGTCTC 2 cut(s) 10, 245
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 10
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 10, 245
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 35, 142
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstSLI GKGCMC 2 cut(s) 138, 265
BsuRI GGCC 2 cut(s) 136, 263
CaiI CAGNNNCTG 1 cut(s) 180
Cfr13I GGNCC 5 cut(s) 134, 135, 151, 261, 262
CviJI RGCY 8 cut(s) 116, 136, 145, 205, 235, 263, 279, 284
CviKI_1 RGCY 8 cut(s) 116, 136, 145, 205, 235, 263, 279, 284
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco24I GRGCYC 3 cut(s) 138, 237, 265
Eco31I GGTCTC 2 cut(s) 10, 245
Eco47I GGWCC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 8
EcoT38I GRGCYC 3 cut(s) 138, 237, 265
FaiI YATR 2 cut(s) 293, 298
FbaI TGATCA 1 cut(s) 171
FriOI GRGCYC 3 cut(s) 138, 237, 265
GsaI CCCAGC 2 cut(s) 120, 284
HaeIII GGCC 2 cut(s) 136, 263
HinfI GANTC 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 142
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 22, 93, 102, 166, 294
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 3 cut(s) 91, 94, 97
MhlI GDGCHC 3 cut(s) 138, 237, 265
MluCI AATT 2 cut(s) 127, 254
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 49, 51, 142
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 35, 142
NdeII GATC 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 136, 263
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 8
PspFI CCCAGC 2 cut(s) 116, 280
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 136, 263
PspOMI GGGCCC 2 cut(s) 134, 261
PspPI GGNCC 5 cut(s) 134, 135, 151, 261, 262
PstNI CAGNNNCTG 1 cut(s) 180
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 5 cut(s) 134, 135, 151, 261, 262
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 3 cut(s) 138, 237, 265
SetI ASST 3 cut(s) 14, 118, 207
SinI GGWCC 1 cut(s) 151
Sse9I AATT 2 cut(s) 127, 254
SsiI CCGC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 1 cut(s) 207
TaqII GACCGA 1 cut(s) 227
TasI AATT 2 cut(s) 127, 254
TspDTI ATGAA 2 cut(s) 92, 180
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 127, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.