Rw1G025910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0019335
Physical Location & Seq
Reverse (-)
52732628 .. 52733502
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025910.1

Sequence Viewer

Length: 630 bp
ATGGGGATTGGGGAGGAAGAAACGAGAAAAAGAAGAAGAAGAAGAAGATATGGTAAAGAGAGAAGTAGAGAACTGCATAATGGATTAATGGGGATTGGGGAGGAAGAAAAAAAGGGGGACAAAAAAAAAACGAAGACGAAGAAGAAGAATACGGCTAGAAAAGAGAGAGAGAAGAAAGTGAAAGAGGGTTATGCACTTCTAGGTTTTGTTTTGTTTCATTTCTCCCGCTTAGGATCAAATAAATATAAACTTTGGACAAATTATGTTGAGAGAGTCTCGTGCTCCAGTGGTTGGGAGCAAGGCTTTCGTGTAGGAGGTTGGGGGTTCAAACCTCGCCTCTCACCCAATTTTGTGTGTATTTTGCATAAAGTTGGGAAATTGGATTTGACCCGAAAAGCCCGAAGACCGAACCGGCCCGTTTGGGGTCGGTTTCCATTTTTGAAAAAGCCAGAACAGGCCCGGACAGATTGTTTCCTGCTCGGTCTTGGTCTCACCAAATTTTGGGCCCGGCCCGGCCCGAGCCCAGGCCTAATTCACACTAACTATCTTGCAAATATAGATTTCAATTTCACATATGCATGCATTTTCTATGTGTTAATTCCCGTATCTAGTACATGTCAAGACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.38

Weight (kDa)

10.27

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019335)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315681 RchiOBHm_Chr1g0342351 RchiOBHm_Chr4g0426241 RchiOBHm_Chr5g0070581
rosa_multiflora Rmu_sc0003207.1_g000005
rosa_rugosa Rorug01G0175300
rosa_samantha Rh4AG009300
rosa_wichuraiana Rw1G025910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 291, 501
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 4 cut(s) 291, 422, 501, 524
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 328, 442, 565
AjnI CCWGG 1 cut(s) 523
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 280, 494
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 6 cut(s) 413, 456, 504, 509, 514, 526
ApaI GGGCCC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 497
AseI ATTAAT 1 cut(s) 86
AspS9I GGNCC 6 cut(s) 414, 457, 504, 505, 510, 515
AsuC2I CCSGG 3 cut(s) 460, 508, 513
AsuHPI GGTGA 2 cut(s) 333, 484
AvaI CYCGRG 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 508
BanII GRGCYC 2 cut(s) 508, 524
BauI CACGAG 1 cut(s) 277
BbsI GAAGAC 2 cut(s) 140, 409
Bbv12I GWGCWC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 3 cut(s) 460, 508, 513
BcoDI GTCTC 2 cut(s) 280, 494
BfaI CTAG 3 cut(s) 156, 200, 609
Bme1390I CCNGG 4 cut(s) 460, 508, 513, 525
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 6 cut(s) 414, 457, 504, 505, 510, 515
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 4 cut(s) 460, 508, 513, 525
BpiI GAAGAC 2 cut(s) 140, 409
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 229
BpuMI CCSGG 3 cut(s) 460, 508, 513
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 422, 501, 524
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 523
BseLI CCNNNNNNNGG 4 cut(s) 291, 422, 501, 524
BseNI ACTGG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 508
BshFI GGCC 6 cut(s) 415, 458, 506, 511, 516, 528
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 4 cut(s) 412, 460, 508, 513
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 4 cut(s) 291, 422, 501, 524
BsmAI GTCTC 2 cut(s) 280, 494
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 6 cut(s) 415, 458, 506, 511, 516, 528
Bso31I GGTCTC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 517
Bsp120I GGGCCC 1 cut(s) 504
Bsp1286I GDGCHC 3 cut(s) 284, 508, 524
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 1 cut(s) 226
BspANI GGCC 6 cut(s) 415, 458, 506, 511, 516, 528
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 1 cut(s) 233
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 229
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 2 cut(s) 280, 494
BstMBI GATC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 2 cut(s) 582, 618
BstSCI CCNGG 4 cut(s) 458, 506, 511, 523
BstSLI GKGCMC 1 cut(s) 508
BstV2I GAAGAC 2 cut(s) 140, 409
BsuRI GGCC 6 cut(s) 415, 458, 506, 511, 516, 528
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 6 cut(s) 414, 457, 504, 505, 510, 515
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 579, 615
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 1 cut(s) 229
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 508, 524
Eco31I GGTCTC 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 580, 584
EcoT38I GRGCYC 2 cut(s) 508, 524
FaeI CATG 2 cut(s) 582, 618
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 578, 614
FauI CCCGC 1 cut(s) 233
FauNDI CATATG 1 cut(s) 574
FriOI GRGCYC 2 cut(s) 508, 524
FspBI CTAG 3 cut(s) 156, 200, 609
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 6 cut(s) 415, 458, 506, 511, 516, 528
HapII CCGG 4 cut(s) 412, 460, 508, 513
Hin1II CATG 2 cut(s) 582, 618
HinfI GANTC 1 cut(s) 273
HpaII CCGG 4 cut(s) 412, 460, 508, 513
HphI GGTGA 2 cut(s) 333, 484
Hpy188III TCNNGA 1 cut(s) 620
HpyCH4V TGCA 6 cut(s) 76, 194, 364, 551, 578, 582
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 2 cut(s) 582, 618
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 287, 295
MaeI CTAG 3 cut(s) 156, 200, 609
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MhlI GDGCHC 3 cut(s) 284, 508, 524
MluCI AATT 7 cut(s) 259, 346, 377, 497, 531, 565, 597
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 6 cut(s) 7, 94, 178, 308, 342, 347
Mph1103I ATGCAT 2 cut(s) 580, 584
MseI TTAA 2 cut(s) 86, 596
MslI CAYNNNNRTG 1 cut(s) 577
MspI CCGG 4 cut(s) 412, 460, 508, 513
MspR9I CCNGG 4 cut(s) 460, 508, 513, 525
MvaI CCWGG 1 cut(s) 525
NciI CCSGG 3 cut(s) 460, 508, 513
NdeI CATATG 1 cut(s) 574
NdeII GATC 1 cut(s) 233
NlaIII CATG 2 cut(s) 582, 618
NlaIV GGNNCC 1 cut(s) 506
NsiI ATGCAT 2 cut(s) 580, 584
NspI RCATGY 2 cut(s) 582, 618
PaeI GCATGC 1 cut(s) 582
PceI AGGCCT 1 cut(s) 528
PciI ACATGT 1 cut(s) 614
PflMI CCANNNNNTGG 2 cut(s) 291, 501
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PscI ACATGT 1 cut(s) 614
PshBI ATTAAT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 506
PspOMI GGGCCC 1 cut(s) 504
PspPI GGNCC 6 cut(s) 414, 457, 504, 505, 510, 515
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 577
SaqAI TTAA 2 cut(s) 86, 596
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 6 cut(s) 414, 457, 504, 505, 510, 515
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 4 cut(s) 460, 508, 513, 525
SduI GDGCHC 3 cut(s) 284, 508, 524
SetI ASST 3 cut(s) 205, 319, 334
SmiMI CAYNNNNRTG 1 cut(s) 577
SphI GCATGC 1 cut(s) 582
Sse9I AATT 7 cut(s) 259, 346, 377, 497, 531, 565, 597
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 1 cut(s) 226
SspMI CTAG 3 cut(s) 156, 200, 609
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 4 cut(s) 458, 506, 511, 523
TaqII GACCGA 2 cut(s) 421, 470
TasI AATT 7 cut(s) 259, 346, 377, 497, 531, 565, 597
TatI WGTACW 1 cut(s) 611
Tru1I TTAA 2 cut(s) 86, 596
Tru9I TTAA 2 cut(s) 86, 596
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 2 cut(s) 291, 501
VspI ATTAAT 1 cut(s) 86
XapI RAATTY 1 cut(s) 497
XceI RCATGY 2 cut(s) 582, 618
XspI CTAG 3 cut(s) 156, 200, 609
Zsp2I ATGCAT 2 cut(s) 580, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.