RchiOBHm_Chr1g0320341

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
7995840 .. 7997035
1196 bp
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UTR
Exon/CDS
Intron
PRQ55050

Sequence Viewer

Length: 288 bp
ATGACCTCTTGTCTCAGATCGAGGTTGCCTCCAGCAGTCCAGCTCCAAGCTTTATCCCTCATCGGCTCATCCTCTTCTCTCAGATCGGGGTTTTTCTATCACTCCAAACGACCAAACTTTTCTCTCTTTCTCAACCGCTGTGCCTCCATTCTCTCCAGATCTCCATCACTCCAAACGACCAAACTTTTCTCTCTTTCTCAACCGCTCCTCATTCACGACTCACAGTCTCATAGTCACATCGATATTTCAATCCTCTCCCTCCGACTCACAGTCACATCGATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.55

Weight (kDa)

11.3

Isoelectric Point (pI)

94.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AciI CCGC 2 cut(s) 136, 203
AgsI TTSAA 1 cut(s) 249
AhdI GACNNNNNGTC 3 cut(s) 9, 223, 269
AluBI AGCT 2 cut(s) 43, 50
AluI AGCT 2 cut(s) 43, 50
Alw26I GTCTC 2 cut(s) 17, 231
BccI CCATC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 17, 231
BglII AGATCT 1 cut(s) 158
BmeRI GACNNNNNGTC 3 cut(s) 9, 223, 269
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 2 cut(s) 15, 139
Bsa29I ATCGAT 2 cut(s) 240, 278
BsaBI GATNNNNATC 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 163
BseCI ATCGAT 2 cut(s) 240, 278
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 163
BseMII CTCAG 2 cut(s) 28, 94
BseRI GAGGAG 1 cut(s) 197
BshVI ATCGAT 2 cut(s) 240, 278
BsmAI GTCTC 2 cut(s) 17, 231
Bsp143I GATC 4 cut(s) 17, 83, 158, 279
BspACI CCGC 2 cut(s) 136, 203
BspCNI CTCAG 2 cut(s) 27, 93
BspDI ATCGAT 2 cut(s) 240, 278
BsrBI CCGCTC 1 cut(s) 205
BssMI GATC 4 cut(s) 17, 83, 158, 279
Bst4CI ACNGT 2 cut(s) 225, 271
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 14, 80
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 4 cut(s) 20, 86, 161, 282
BstMAI GTCTC 2 cut(s) 17, 231
BstMBI GATC 4 cut(s) 17, 83, 158, 279
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
Bsu15I ATCGAT 2 cut(s) 240, 278
BsuTUI ATCGAT 2 cut(s) 240, 278
BtsCI GGATG 1 cut(s) 68
ClaI ATCGAT 2 cut(s) 240, 278
CviJI RGCY 3 cut(s) 43, 50, 66
CviKI_1 RGCY 3 cut(s) 43, 50, 66
DdeI CTNAG 2 cut(s) 14, 80
DpnI GATC 4 cut(s) 19, 85, 160, 281
DpnII GATC 4 cut(s) 17, 83, 158, 279
DriI GACNNNNNGTC 3 cut(s) 9, 223, 269
Eam1104I CTCTTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 3 cut(s) 9, 223, 269
EarI CTCTTC 1 cut(s) 79
FaiI YATR 1 cut(s) 231
FokI GGATG 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 15, 139
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 2 cut(s) 218, 264
Hpy188I TCNGA 3 cut(s) 17, 83, 263
Hpy188III TCNNGA 2 cut(s) 156, 215
HpyCH4III ACNGT 2 cut(s) 225, 271
HpyF3I CTNAG 2 cut(s) 14, 80
Kzo9I GATC 4 cut(s) 17, 83, 158, 279
LmnI GCTCC 2 cut(s) 48, 210
LpnPI CCDG 3 cut(s) 45, 53, 169
MaeIII GTNAC 2 cut(s) 233, 271
MalI GATC 4 cut(s) 19, 85, 160, 281
MbiI CCGCTC 1 cut(s) 205
MboI GATC 4 cut(s) 17, 83, 158, 279
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 158
MlyI GAGTC 2 cut(s) 212, 258
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 9 cut(s) 15, 16, 39, 68, 82, 154, 218, 263, 269
MspA1I CMGCKG 1 cut(s) 138
NdeII GATC 4 cut(s) 17, 83, 158, 279
NmuCI GTSAC 2 cut(s) 233, 271
PleI GAGTC 2 cut(s) 212, 258
PpsI GAGTC 2 cut(s) 212, 258
PsuI RGATCY 1 cut(s) 158
Sau3AI GATC 4 cut(s) 17, 83, 158, 279
SchI GAGTC 2 cut(s) 212, 258
SetI ASST 4 cut(s) 8, 26, 45, 52
SgeI CNNG 8 cut(s) 21, 33, 44, 52, 59, 99, 168, 227
SsiI CCGC 2 cut(s) 136, 203
TaaI ACNGT 2 cut(s) 225, 271
TaqI TCGA 3 cut(s) 20, 240, 278
TseFI GTSAC 2 cut(s) 233, 271
Tsp45I GTSAC 2 cut(s) 233, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.