Rorug01G0346200

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
46355325 .. 46356229
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0346200.1

Sequence Viewer

Length: 315 bp
ATGGAATTGATGTATAAAACCATTAGATTGATTGAATTTGGGATGTCTATGAATTTTATTAATACGGAATTGAAATGCTTCTGCAATTTGTTTCGGGAAACTGACAGAAAAGAAGATGGGTATTCCTTATCCAGTAGCGAGATCAAGCAGTTTCAATTGACAATGGAGGAAGTTGATGAGCTGCTGAAGAGCAGCACATTTGAGCTTGGTTATCTGGTCAACTTGCGGACCTTGCTTTGTAGGAAGTGCAATGAAACATTCAGAAGACTGGAGGGGAAAGATCAGAAATGCTTAAGCTTCAATCAAATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.41

Weight (kDa)

5.54

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AcsI RAATTY 2 cut(s) 35, 52
AcuI CTGAAG 1 cut(s) 206
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 35, 73, 155, 301
AluBI AGCT 3 cut(s) 181, 205, 297
AluI AGCT 3 cut(s) 181, 205, 297
ApeKI GCWGC 2 cut(s) 181, 192
ApoI RAATTY 2 cut(s) 35, 52
AseI ATTAAT 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 228
AvaII GGWCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 168, 204
BccI CCATC 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 292
BisI GCNGC 2 cut(s) 182, 193
BlsI GCNGC 2 cut(s) 183, 194
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 132, 273
Bse3DI GCAATG 1 cut(s) 256
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 132, 273
BseXI GCAGC 2 cut(s) 168, 204
Bsp143I GATC 2 cut(s) 141, 280
BspACI CCGC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 256
BsrI ACTGG 2 cut(s) 132, 273
BssMI GATC 2 cut(s) 141, 280
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 144, 283
BstMBI GATC 2 cut(s) 141, 280
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 168, 204
BstV2I GAAGAC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 228
CviJI RGCY 3 cut(s) 181, 205, 297
CviKI_1 RGCY 3 cut(s) 181, 205, 297
DpnI GATC 2 cut(s) 143, 282
DpnII GATC 2 cut(s) 141, 280
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 206
FaiI YATR 2 cut(s) 15, 50
Fnu4HI GCNGC 2 cut(s) 182, 193
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 182, 193
GluI GCNGC 2 cut(s) 182, 193
GsuI CTGGAG 1 cut(s) 290
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 263, 285
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 84, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 141, 280
LguI GCTCTTC 1 cut(s) 182
LpnPI CCDG 3 cut(s) 145, 200, 254
Lsp1109I GCAGC 2 cut(s) 168, 204
MalI GATC 2 cut(s) 143, 282
MboI GATC 2 cut(s) 141, 280
MboII GAAGA 3 cut(s) 125, 199, 276
MfeI CAATTG 1 cut(s) 155
MluCI AATT 6 cut(s) 5, 35, 52, 68, 85, 155
MnlI CCTC 2 cut(s) 160, 265
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 2 cut(s) 60, 293
MspCI CTTAAG 1 cut(s) 292
MunI CAATTG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 2 cut(s) 141, 280
PciSI GCTCTTC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 183, 194
PshBI ATTAAT 1 cut(s) 60
PspPI GGNCC 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 60, 293
SatI GCNGC 2 cut(s) 182, 193
Sau3AI GATC 2 cut(s) 141, 280
Sau96I GGNCC 1 cut(s) 228
SetI ASST 4 cut(s) 183, 207, 233, 299
SgeI CNNG 9 cut(s) 107, 144, 151, 157, 218, 227, 235, 244, 281
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 6 cut(s) 5, 35, 52, 68, 85, 155
SsiI CCGC 1 cut(s) 226
TasI AATT 6 cut(s) 5, 35, 52, 68, 85, 155
Tru1I TTAA 2 cut(s) 60, 293
Tru9I TTAA 2 cut(s) 60, 293
TseI GCWGC 2 cut(s) 181, 192
TspDTI ATGAA 2 cut(s) 65, 267
TspGWI ACGGA 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 228
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 2 cut(s) 35, 52
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.