RLG00000023116

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018952
Physical Location & Seq
Forward (+)
18346351 .. 18347875
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023116

Sequence Viewer

Length: 318 bp
ATGATCAAGAAAACGATCATGAAGATCGGGTGCCATAAGAGGCTGAGGAAGACGATGAAGAGCACAACTCCGCCACCATCAAACTCATCGAGTCGGCACGGCCTGGTCATCGGATTTGCGAGAGTTGTCCTCAAAGGTGTCTTCGTCGGCGAAGCGAGCGACGGCCTCAAGCTCTTCCTCGTCCTTTTCGTTGTTGATCGACTCTGCCGGATCCTAGATCTATTGCTTCGCCGCCAGATCCTCAATTTGTTGCTTCGCCATTGGAGCCTCAATTCGTTGCTTCATTGTCGGAACCTCCCTTTGTTGCTTCATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

11.61

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 2 cut(s) 71, 232
AclWI GGATC 3 cut(s) 205, 218, 232
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 65
AlwI GGATC 3 cut(s) 205, 218, 232
AoxI GGCC 2 cut(s) 100, 163
BamHI GGATCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 56, 133
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 85
BceAI ACGGC 2 cut(s) 115, 178
BciT130I CCWGG 1 cut(s) 104
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 215
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 4 cut(s) 32, 212, 266, 293
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 2 cut(s) 56, 133
BplI GAGNNNNNCTC 4 cut(s) 52, 84, 114, 146
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 35
BshFI GGCC 2 cut(s) 102, 165
BshNI GGYRCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 208
BsnI GGCC 2 cut(s) 102, 165
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
BspACI CCGC 2 cut(s) 71, 232
BspANI GGCC 2 cut(s) 102, 165
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 4 cut(s) 32, 212, 266, 293
BspPI GGATC 3 cut(s) 205, 218, 232
BspQI GCTCTTC 2 cut(s) 53, 179
BspT107I GGYRCC 1 cut(s) 30
BssMI GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 53, 179
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 44
BstKTI GATC 7 cut(s) 6, 18, 27, 199, 213, 220, 240
BstMBI GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
BstMWI GCNNNNNNNGC 2 cut(s) 156, 264
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV2I GAAGAC 2 cut(s) 56, 133
BstX2I RGATCY 3 cut(s) 210, 217, 237
BstYI RGATCY 3 cut(s) 210, 217, 237
BsuRI GGCC 2 cut(s) 102, 165
BtgZI GCGATG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 18
CviAII CATG 1 cut(s) 19
CviJI RGCY 5 cut(s) 43, 102, 165, 172, 267
CviKI_1 RGCY 5 cut(s) 43, 102, 165, 172, 267
DdeI CTNAG 1 cut(s) 44
DpnI GATC 7 cut(s) 5, 17, 26, 198, 212, 219, 239
DpnII GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
Eam1104I CTCTTC 2 cut(s) 53, 179
EarI CTCTTC 2 cut(s) 53, 179
EciI GGCGGA 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 36
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 2 cut(s) 102, 165
HapII CCGG 1 cut(s) 208
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 91, 201
HpaII CCGG 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 113, 291
Hpy188III TCNNGA 2 cut(s) 7, 19
Hpy99I CGWCG 2 cut(s) 149, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 264
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
LguI GCTCTTC 2 cut(s) 53, 179
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 4 cut(s) 89, 116, 221, 248
MaeI CTAG 1 cut(s) 215
MalI GATC 7 cut(s) 5, 17, 26, 198, 212, 219, 239
MboI GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
MboII GAAGA 5 cut(s) 34, 61, 70, 133, 166
MflI RGATCY 3 cut(s) 210, 217, 237
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 244, 271
MlyI GAGTC 2 cut(s) 100, 195
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 33, 39, 140, 176, 188, 251, 278, 305
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 156, 264
NdeII GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 4 cut(s) 32, 212, 266, 293
PagI TCATGA 1 cut(s) 18
PciSI GCTCTTC 2 cut(s) 53, 179
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 2 cut(s) 99, 195
PpsI GAGTC 2 cut(s) 99, 195
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 32, 212, 266, 293
PsuI RGATCY 3 cut(s) 210, 217, 237
SapI GCTCTTC 2 cut(s) 53, 179
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 7 cut(s) 3, 15, 24, 196, 210, 217, 237
SchI GAGTC 2 cut(s) 100, 195
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 139, 174, 297
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 2 cut(s) 244, 271
SsiI CCGC 2 cut(s) 71, 232
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 102
TaqI TCGA 2 cut(s) 89, 199
TasI AATT 2 cut(s) 244, 271
TauI GCSGC 1 cut(s) 234
TspDTI ATGAA 4 cut(s) 35, 71, 272, 299
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.