Rh6DG320200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
52363561 .. 52365189
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG320200.1

Sequence Viewer

Length: 219 bp
ATGACTCAGAGTCTCAGATCGACCATCTCCATAGCTCCTCAGCCTCCTCTCGACCTAAACCTCCATAGCTCCATCGACTCACTTTCTCAGCCACGACTCAGAGTCTCAGATCGACCACGGCCTCTTCCTCTTGTCGCAGATCGAGGTTGCCTCCAGCTCCAAGCTCCATCCCTAATCCTCTTCTCTCAGATCGACCACGACCTCTTCCTCTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.0

Weight (kDa)

6.7

Isoelectric Point (pI)

71.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AhdI GACNNNNNGTC 2 cut(s) 9, 101
AluBI AGCT 4 cut(s) 35, 69, 157, 164
AluI AGCT 4 cut(s) 35, 69, 157, 164
Alw26I GTCTC 2 cut(s) 17, 109
AoxI GGCC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 39
BccI CCATC 3 cut(s) 32, 80, 175
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 17, 109
BmeRI GACNNNNNGTC 2 cut(s) 9, 101
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 7 cut(s) 20, 28, 53, 101, 112, 120, 200
BseRI GAGGAG 2 cut(s) 27, 36
BshFI GGCC 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 17, 109
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 4 cut(s) 17, 109, 139, 189
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 7 cut(s) 19, 27, 52, 100, 111, 119, 199
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 4 cut(s) 17, 109, 139, 189
Bst6I CTCTTC 3 cut(s) 129, 185, 209
BstDEI CTNAG 8 cut(s) 6, 14, 39, 87, 98, 106, 186, 216
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 4 cut(s) 20, 112, 142, 192
BstMAI GTCTC 2 cut(s) 17, 109
BstMBI GATC 4 cut(s) 17, 109, 139, 189
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 167
CviJI RGCY 7 cut(s) 35, 43, 69, 91, 121, 157, 164
CviKI_1 RGCY 7 cut(s) 35, 43, 69, 91, 121, 157, 164
DdeI CTNAG 8 cut(s) 6, 14, 39, 87, 98, 106, 186, 216
DpnI GATC 4 cut(s) 19, 111, 141, 191
DpnII GATC 4 cut(s) 17, 109, 139, 189
DriI GACNNNNNGTC 2 cut(s) 9, 101
Eam1104I CTCTTC 3 cut(s) 129, 185, 209
Eam1105I GACNNNNNGTC 2 cut(s) 9, 101
EarI CTCTTC 3 cut(s) 129, 185, 209
FaiI YATR 2 cut(s) 32, 66
FokI GGATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 121
HinfI GANTC 5 cut(s) 4, 10, 77, 96, 102
Hpy188I TCNGA 5 cut(s) 9, 17, 101, 109, 189
Hpy188III TCNNGA 1 cut(s) 50
HpyF3I CTNAG 8 cut(s) 6, 14, 39, 87, 98, 106, 186, 216
Kzo9I GATC 4 cut(s) 17, 109, 139, 189
LmnI GCTCC 4 cut(s) 40, 74, 162, 169
LpnPI CCDG 1 cut(s) 167
MalI GATC 4 cut(s) 19, 111, 141, 191
MboI GATC 4 cut(s) 17, 109, 139, 189
MboII GAAGA 3 cut(s) 116, 172, 196
MlyI GAGTC 4 cut(s) 19, 71, 90, 111
NdeII GATC 4 cut(s) 17, 109, 139, 189
PleI GAGTC 4 cut(s) 18, 71, 90, 110
PpsI GAGTC 4 cut(s) 18, 71, 90, 110
Sau3AI GATC 4 cut(s) 17, 109, 139, 189
SchI GAGTC 4 cut(s) 19, 71, 90, 111
SetI ASST 8 cut(s) 37, 57, 63, 71, 148, 159, 166, 204
SgeI CNNG 8 cut(s) 62, 105, 129, 143, 155, 166, 173, 209
TaqI TCGA 6 cut(s) 20, 51, 75, 112, 142, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.