Rh1AG448300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
66795931 .. 66801092
5162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG448300.1

Sequence Viewer

Length: 279 bp
ATGCTTAAGCTTCGAAACCTTGGATTAACAGTGGAGGGAGAAGAGGTCGGAGTACTTGGACTGGCAGAGCTGGGCGGCGAGGACGGAGTTGATGGTGTAGATGGTGCGGCGGTAGTTGGAGTAGATGGAGTGGCGGGTGTAGAGGGCGGCTTCTTCGTTGCGGCAGATGAAGAGCTTACAAGTCTTCTGTGCCATAAGAGGTTGAGGAAGACGATGAAGAGCACAACTCCGCAACCATCGAACTCACCGAGACAGGTTGAGGAATTCAAGCCGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.64

Weight (kDa)

4.77

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 75, 107, 110, 134, 147, 161, 230
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 54
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 3 cut(s) 10, 70, 175
AluI AGCT 3 cut(s) 10, 70, 175
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 237
AsuII TTCGAA 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 176, 215
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 4 cut(s) 86, 95, 119, 244
BcoDI GTCTC 1 cut(s) 244
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 4 cut(s) 76, 108, 148, 162
BlsI GCNGC 4 cut(s) 77, 109, 149, 163
BmcAI AGTACT 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 176, 215
BplI GAGNNNNNCTC 2 cut(s) 211, 243
Bpu14I TTCGAA 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 224
BspACI CCGC 7 cut(s) 75, 107, 110, 134, 147, 161, 230
BspQI GCTCTTC 2 cut(s) 165, 212
BspT104I TTCGAA 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 3 cut(s) 36, 165, 212
BstAFI CTTAAG 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 244
BstV2I GAAGAC 2 cut(s) 176, 215
BtsIMutI CAGTG 1 cut(s) 36
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 5 cut(s) 10, 70, 150, 175, 271
CviKI_1 RGCY 5 cut(s) 10, 70, 150, 175, 271
CviQI GTAC 1 cut(s) 53
Eam1104I CTCTTC 3 cut(s) 36, 165, 212
EarI CTCTTC 3 cut(s) 36, 165, 212
Eco130I CCWWGG 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaiI YATR 1 cut(s) 195
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 76, 108, 148, 162
Fsp4HI GCNGC 4 cut(s) 76, 108, 148, 162
GluI GCNGC 4 cut(s) 76, 108, 148, 162
GsaI CCCAGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 8
HphI GGTGA 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 31
LguI GCTCTTC 2 cut(s) 165, 212
LpnPI CCDG 3 cut(s) 47, 56, 239
MboII GAAGA 6 cut(s) 53, 145, 176, 182, 220, 229
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 28, 97
MnlI CCTC 7 cut(s) 28, 37, 73, 136, 192, 198, 253
MseI TTAA 2 cut(s) 6, 26
MspCI CTTAAG 1 cut(s) 5
NspV TTCGAA 1 cut(s) 13
PciSI GCTCTTC 2 cut(s) 165, 212
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PkrI GCNGC 4 cut(s) 77, 109, 149, 163
PspFI CCCAGC 1 cut(s) 70
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 2 cut(s) 165, 212
SaqAI TTAA 2 cut(s) 6, 26
SatI GCNGC 4 cut(s) 76, 108, 148, 162
ScaI AGTACT 1 cut(s) 54
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 12, 21, 48, 72, 177, 203, 258
SfuI TTCGAA 1 cut(s) 13
SgeI CNNG 9 cut(s) 32, 68, 74, 83, 91, 147, 192, 261, 266
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 1 cut(s) 263
SsiI CCGC 7 cut(s) 75, 107, 110, 134, 147, 161, 230
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 13, 239
TasI AATT 1 cut(s) 263
TatI WGTACW 1 cut(s) 52
TauI GCSGC 4 cut(s) 78, 110, 150, 164
Tru1I TTAA 2 cut(s) 6, 26
Tru9I TTAA 2 cut(s) 6, 26
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 183, 230
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 5
XapI RAATTY 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.