Rh1CG418000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
67855738 .. 67856255
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG418000.1

Sequence Viewer

Length: 255 bp
ATGCTTAAGCTTCGAAATCCAAGATTAACAGTGGAGGGAGAAGAGGTCGGAGTACTTGAACTGGCGGAGCTGGGTGGCGAGGACGGAGTTGATGGTGTAGATGGTGCGGCAGCAGTTGGAGTAGATGGGGTGGCAAGTGTAGAGGGCGGCTTCTTCGTTGCAGTAGATGAAGAGCTTACAAGTCTTCTGTGCCATAAGAGACTGAGGAAGACGATGAAAAGCACAACTCCGCCACCATCAAACTCACTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.79

Weight (kDa)

4.72

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320341
rosa_laevigata RLG00000018456 RLG00000023116
rosa_multiflora Rmu_sc0004125.1_g000011
rosa_roxburghii Rroxscaffold_7G00192370
rosa_rugosa Rorug01G0346200
rosa_samantha Rh1AG448300 Rh1CG418000 Rh6DG320200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 65, 107, 147, 230
AfaI GTAC 1 cut(s) 54
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 1 cut(s) 59
AluBI AGCT 3 cut(s) 10, 70, 175
AluI AGCT 3 cut(s) 10, 70, 175
Alw26I GTCTC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 176, 215
BbvI GCAGC 1 cut(s) 122
BccI CCATC 4 cut(s) 86, 95, 119, 244
BcoDI GTCTC 1 cut(s) 193
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 3 cut(s) 108, 111, 148
BlsI GCNGC 3 cut(s) 109, 112, 149
BmcAI AGTACT 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 176, 215
Bpu14I TTCGAA 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 194, 239
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 13
BspACI CCGC 4 cut(s) 65, 107, 147, 230
BspCNI CTCAG 2 cut(s) 195, 240
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 36, 165
BstAFI CTTAAG 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 203, 248
BstMAI GTCTC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 176, 215
BtsIMutI CAGTG 2 cut(s) 36, 245
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 4 cut(s) 10, 70, 150, 175
CviKI_1 RGCY 4 cut(s) 10, 70, 150, 175
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 203, 248
Eam1104I CTCTTC 2 cut(s) 36, 165
EarI CTCTTC 2 cut(s) 36, 165
EciI GGCGGA 2 cut(s) 80, 219
FaiI YATR 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 108, 111, 148
Fsp4HI GCNGC 3 cut(s) 108, 111, 148
GluI GCNGC 3 cut(s) 108, 111, 148
GsaI CCCAGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 203, 248
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 47, 56
Lsp1109I GCAGC 1 cut(s) 122
MboII GAAGA 5 cut(s) 53, 145, 176, 182, 220
MmeI TCCRAC 2 cut(s) 28, 97
MnlI CCTC 6 cut(s) 28, 37, 73, 136, 198, 243
MseI TTAA 2 cut(s) 6, 26
MspCI CTTAAG 1 cut(s) 5
NspV TTCGAA 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 165
PkrI GCNGC 3 cut(s) 109, 112, 149
PspFI CCCAGC 1 cut(s) 70
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 6, 26
SatI GCNGC 3 cut(s) 108, 111, 148
ScaI AGTACT 1 cut(s) 54
SetI ASST 5 cut(s) 12, 48, 72, 177, 254
SfuI TTCGAA 1 cut(s) 13
SgeI CNNG 7 cut(s) 33, 68, 74, 83, 91, 147, 192
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 4 cut(s) 65, 107, 147, 230
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 13
TatI WGTACW 1 cut(s) 52
TauI GCSGC 2 cut(s) 110, 150
Tru1I TTAA 2 cut(s) 6, 26
Tru9I TTAA 2 cut(s) 6, 26
TscAI CASTG 2 cut(s) 36, 252
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 183, 230
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 2 cut(s) 36, 252
Vha464I CTTAAG 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.