disease resistance
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g02890 |
| malus_domestica | MD02G1288600.v1.1 |
| prunus_persica | Prupe.2G034400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0323841 RchiOBHm_Chr1g0323851 |
| rosa_multiflora | Rmu_sc0013355.1_g000006 |
| rosa_rugosa | Rorug01G0040200 |
| rosa_samantha | Rh1AG057300 Rh1BG048400 Rh1CG058700 Rh1DG062600 |
| rosa_wichuraiana | Rw1G004900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 636 |
| Acc65I | GGTACC | 1 cut(s) | 885 |
| AccB1I | GGYRCC | 1 cut(s) | 885 |
| AccBSI | CCGCTC | 1 cut(s) | 987 |
| AciI | CCGC | 1 cut(s) | 987 |
| AclWI | GGATC | 1 cut(s) | 882 |
| AcsI | RAATTY | 2 cut(s) | 68, 781 |
| AfaI | GTAC | 2 cut(s) | 887, 964 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 572 |
| AgsI | TTSAA | 8 cut(s) | 38, 121, 436, 548, 682, 791, 802, 1001 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 794, 826, 853, 885 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 4 cut(s) | 253, 266, 287, 974 |
| AluI | AGCT | 4 cut(s) | 253, 266, 287, 974 |
| AlwI | GGATC | 1 cut(s) | 882 |
| AoxI | GGCC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| ApoI | RAATTY | 2 cut(s) | 68, 781 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 656, 688 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 824 |
| Asp718I | GGTACC | 1 cut(s) | 885 |
| AspLEI | GCGC | 1 cut(s) | 637 |
| AsuHPI | GGTGA | 3 cut(s) | 118, 471, 736 |
| BanI | GGYRCC | 1 cut(s) | 885 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 161, 193 |
| BbvCI | CCTCAGC | 1 cut(s) | 162 |
| BbvI | GCAGC | 1 cut(s) | 189 |
| BccI | CCATC | 2 cut(s) | 274, 358 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 718, 752 |
| BfaI | CTAG | 5 cut(s) | 74, 258, 357, 428, 702 |
| BfmI | CTRYAG | 2 cut(s) | 186, 597 |
| BisI | GCNGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 1 cut(s) | 204 |
| BmiI | GGNNCC | 3 cut(s) | 326, 567, 887 |
| BmsI | GCATC | 4 cut(s) | 148, 220, 703, 1040 |
| Bpu10I | CCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 937 |
| BsaAI | YACGTR | 1 cut(s) | 575 |
| BsaBI | GATNNNNATC | 1 cut(s) | 873 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 158, 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| Bse1I | ACTGG | 1 cut(s) | 645 |
| Bse8I | GATNNNNATC | 1 cut(s) | 873 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseJI | GATNNNNATC | 1 cut(s) | 873 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 645 |
| BseRI | GAGGAG | 3 cut(s) | 179, 575, 578 |
| BseXI | GCAGC | 1 cut(s) | 189 |
| BseYI | CCCAGC | 1 cut(s) | 815 |
| BsgI | GTGCAG | 1 cut(s) | 188 |
| BshFI | GGCC | 1 cut(s) | 78 |
| BshNI | GGYRCC | 1 cut(s) | 885 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 78 |
| Bsp143I | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| BspACI | CCGC | 1 cut(s) | 987 |
| BspANI | GGCC | 1 cut(s) | 78 |
| BspCNI | CTCAG | 1 cut(s) | 154 |
| BspHI | TCATGA | 1 cut(s) | 1020 |
| BspLI | GGNNCC | 3 cut(s) | 326, 567, 887 |
| BspMAI | CTGCAG | 1 cut(s) | 190 |
| BspPI | GGATC | 1 cut(s) | 882 |
| BspT107I | GGYRCC | 1 cut(s) | 885 |
| BsrBI | CCGCTC | 1 cut(s) | 987 |
| BsrI | ACTGG | 1 cut(s) | 645 |
| BssMI | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| Bst4CI | ACNGT | 3 cut(s) | 84, 139, 941 |
| Bst6I | CTCTTC | 1 cut(s) | 815 |
| BstBAI | YACGTR | 1 cut(s) | 575 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 2 cut(s) | 162, 473 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstHHI | GCGC | 1 cut(s) | 637 |
| BstKTI | GATC | 5 cut(s) | 106, 126, 479, 769, 877 |
| BstMBI | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstNSI | RCATGY | 1 cut(s) | 670 |
| BstSFI | CTRYAG | 2 cut(s) | 186, 597 |
| BstV1I | GCAGC | 1 cut(s) | 189 |
| BstX2I | RGATCY | 1 cut(s) | 874 |
| BstYI | RGATCY | 1 cut(s) | 874 |
| BsuRI | GGCC | 1 cut(s) | 78 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsI | GCAGTG | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 2 cut(s) | 195, 946 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| CciI | TCATGA | 1 cut(s) | 1020 |
| CfoI | GCGC | 1 cut(s) | 637 |
| Csp6I | GTAC | 2 cut(s) | 886, 963 |
| CviAII | CATG | 7 cut(s) | 65, 208, 507, 607, 667, 958, 1021 |
| CviQI | GTAC | 2 cut(s) | 886, 963 |
| DdeI | CTNAG | 2 cut(s) | 162, 473 |
| DpnI | GATC | 5 cut(s) | 105, 125, 478, 768, 876 |
| DpnII | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| Eam1104I | CTCTTC | 1 cut(s) | 815 |
| EarI | CTCTTC | 1 cut(s) | 815 |
| Eco147I | AGGCCT | 1 cut(s) | 78 |
| EcoT22I | ATGCAT | 1 cut(s) | 672 |
| FaeI | CATG | 7 cut(s) | 68, 211, 510, 610, 670, 961, 1024 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 113, 145, 753, 785, 812, 844 |
| FatI | CATG | 7 cut(s) | 64, 207, 506, 606, 666, 957, 1020 |
| Fnu4HI | GCNGC | 1 cut(s) | 203 |
| FokI | GGATG | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 1 cut(s) | 203 |
| FspBI | CTAG | 5 cut(s) | 74, 258, 357, 428, 702 |
| FspI | TGCGCA | 1 cut(s) | 636 |
| GlaI | GCGC | 1 cut(s) | 636 |
| GluI | GCNGC | 1 cut(s) | 203 |
| GsaI | CCCAGC | 1 cut(s) | 819 |
| HaeIII | GGCC | 1 cut(s) | 78 |
| HhaI | GCGC | 1 cut(s) | 637 |
| Hin1II | CATG | 7 cut(s) | 68, 211, 510, 610, 670, 961, 1024 |
| Hin6I | GCGC | 1 cut(s) | 635 |
| HinP1I | GCGC | 1 cut(s) | 635 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 5 cut(s) | 290, 368, 503, 1024, 1044 |
| HphI | GGTGA | 3 cut(s) | 118, 471, 736 |
| Hpy166II | GTNNAC | 2 cut(s) | 646, 664 |
| Hpy188I | TCNGA | 2 cut(s) | 757, 1036 |
| Hpy188III | TCNNGA | 2 cut(s) | 770, 1021 |
| Hpy8I | GTNNAC | 2 cut(s) | 646, 664 |
| HpyCH4III | ACNGT | 3 cut(s) | 84, 139, 941 |
| HpyCH4IV | ACGT | 2 cut(s) | 146, 574 |
| HpyCH4V | TGCA | 4 cut(s) | 188, 205, 233, 670 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpyF3I | CTNAG | 2 cut(s) | 162, 473 |
| HpySE526I | ACGT | 2 cut(s) | 146, 574 |
| Hsp92II | CATG | 7 cut(s) | 68, 211, 510, 610, 670, 961, 1024 |
| HspAI | GCGC | 1 cut(s) | 635 |
| KpnI | GGTACC | 1 cut(s) | 889 |
| Kzo9I | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| LmnI | GCTCC | 1 cut(s) | 565 |
| LpnPI | CCDG | 8 cut(s) | 76, 95, 239, 313, 505, 626, 801, 984 |
| Lsp1109I | GCAGC | 1 cut(s) | 189 |
| LweI | GCATC | 4 cut(s) | 148, 220, 703, 1040 |
| MaeI | CTAG | 5 cut(s) | 74, 258, 357, 428, 702 |
| MaeII | ACGT | 2 cut(s) | 146, 574 |
| MaeIII | GTNAC | 4 cut(s) | 139, 704, 724, 925 |
| MalI | GATC | 5 cut(s) | 105, 125, 478, 768, 876 |
| MbiI | CCGCTC | 1 cut(s) | 987 |
| MboI | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| MboII | GAAGA | 7 cut(s) | 26, 133, 205, 394, 550, 832, 1013 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 1 cut(s) | 874 |
| MluCI | AATT | 9 cut(s) | 6, 68, 319, 374, 387, 405, 543, 781, 809 |
| MlyI | GAGTC | 1 cut(s) | 1033 |
| MmeI | TCCRAC | 1 cut(s) | 427 |
| Mph1103I | ATGCAT | 1 cut(s) | 672 |
| MroXI | GAANNNNTTC | 1 cut(s) | 824 |
| MseI | TTAA | 5 cut(s) | 153, 276, 404, 779, 1059 |
| MslI | CAYNNNNRTG | 2 cut(s) | 711, 1052 |
| MunI | CAATTG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NdeII | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| NlaIII | CATG | 7 cut(s) | 68, 211, 510, 610, 670, 961, 1024 |
| NlaIV | GGNNCC | 3 cut(s) | 326, 567, 887 |
| NmuCI | GTSAC | 3 cut(s) | 704, 724, 925 |
| NsbI | TGCGCA | 1 cut(s) | 636 |
| NsiI | ATGCAT | 1 cut(s) | 672 |
| NspI | RCATGY | 1 cut(s) | 670 |
| PagI | TCATGA | 1 cut(s) | 1020 |
| PceI | AGGCCT | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 143 |
| PdmI | GAANNNNTTC | 1 cut(s) | 824 |
| PfeI | GAWTC | 4 cut(s) | 290, 368, 503, 1044 |
| PkrI | GCNGC | 1 cut(s) | 204 |
| PleI | GAGTC | 1 cut(s) | 1032 |
| PpsI | GAGTC | 1 cut(s) | 1032 |
| Ppu21I | YACGTR | 1 cut(s) | 575 |
| PspFI | CCCAGC | 1 cut(s) | 815 |
| PspN4I | GGNNCC | 3 cut(s) | 326, 567, 887 |
| PstI | CTGCAG | 1 cut(s) | 190 |
| PsuI | RGATCY | 1 cut(s) | 874 |
| RsaI | GTAC | 2 cut(s) | 887, 964 |
| RsaNI | GTAC | 2 cut(s) | 886, 963 |
| RseI | CAYNNNNRTG | 2 cut(s) | 711, 1052 |
| SaqAI | TTAA | 5 cut(s) | 153, 276, 404, 779, 1059 |
| SatI | GCNGC | 1 cut(s) | 203 |
| Sau3AI | GATC | 5 cut(s) | 103, 123, 476, 766, 874 |
| SchI | GAGTC | 1 cut(s) | 1033 |
| SfaNI | GCATC | 4 cut(s) | 148, 220, 703, 1040 |
| SfcI | CTRYAG | 2 cut(s) | 186, 597 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 711, 1052 |
| SmlI | CTYRAG | 1 cut(s) | 952 |
| SmoI | CTYRAG | 1 cut(s) | 952 |
| Sse9I | AATT | 9 cut(s) | 6, 68, 319, 374, 387, 405, 543, 781, 809 |
| SseBI | AGGCCT | 1 cut(s) | 78 |
| SsiI | CCGC | 1 cut(s) | 987 |
| SspMI | CTAG | 5 cut(s) | 74, 258, 357, 428, 702 |
| StuI | AGGCCT | 1 cut(s) | 78 |
| TaaI | ACNGT | 3 cut(s) | 84, 139, 941 |
| TaiI | ACGT | 2 cut(s) | 149, 577 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TasI | AATT | 9 cut(s) | 6, 68, 319, 374, 387, 405, 543, 781, 809 |
| TfiI | GAWTC | 4 cut(s) | 290, 368, 503, 1044 |
| Tru1I | TTAA | 5 cut(s) | 153, 276, 404, 779, 1059 |
| Tru9I | TTAA | 5 cut(s) | 153, 276, 404, 779, 1059 |
| TscAI | CASTG | 2 cut(s) | 195, 946 |
| TseFI | GTSAC | 3 cut(s) | 704, 724, 925 |
| TseI | GCWGC | 1 cut(s) | 202 |
| Tsp45I | GTSAC | 3 cut(s) | 704, 724, 925 |
| TspDTI | ATGAA | 4 cut(s) | 81, 395, 516, 1009 |
| TspRI | CASTG | 2 cut(s) | 195, 946 |
| XapI | RAATTY | 2 cut(s) | 68, 781 |
| XceI | RCATGY | 1 cut(s) | 670 |
| XmnI | GAANNNNTTC | 1 cut(s) | 824 |
| XspI | CTAG | 5 cut(s) | 74, 258, 357, 428, 702 |
| Zsp2I | ATGCAT | 1 cut(s) | 672 |