Rh1CG058700

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017705
Physical Location & Seq
Reverse (-)
11557324 .. 11557759
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG058700.1

Sequence Viewer

Length: 318 bp
ATGGCTATTGGAGAGGCTTTTCTCTCTGCCTTTCTTCAAGTTCTGTTTGATAGATTGGCTTCCCATGAATTTCTAGGCCTACTGTGTGGCAGGAACTACAATGATCTGCTGGATAAGTTGAAGATCACCTTGCTGACGGTTACTACGTTGCTTAATGATGCTGAGGAGAAGCAGTTTTACAATACTGCAGTGAAGAAGTGGCTGCACATGACTAAAGATGCTTTATATGATGCAGAGGATATACTCGATGAGCTGGCTAGTGAAGCTTTGGCATTTAAGATGGAAGCTGAATCTCATACCAGCACGAATAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

4.78

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 94 6.7e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02890
malus_domestica MD02G1288600.v1.1
prunus_persica Prupe.2G034400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0323841 RchiOBHm_Chr1g0323851
rosa_multiflora Rmu_sc0013355.1_g000006
rosa_rugosa Rorug01G0040200
rosa_samantha Rh1AG057300 Rh1BG048400 Rh1CG058700 Rh1DG062600
rosa_wichuraiana Rw1G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 68
AgsI TTSAA 2 cut(s) 38, 121
AluBI AGCT 3 cut(s) 253, 266, 287
AluI AGCT 3 cut(s) 253, 266, 287
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 274
BfaI CTAG 2 cut(s) 74, 258
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmsI GCATC 3 cut(s) 148, 208, 220
Bpu10I CCTNAGC 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 78
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 103, 123
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 190
BssMI GATC 2 cut(s) 103, 123
Bst4CI ACNGT 2 cut(s) 84, 139
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 2 cut(s) 106, 126
BstMBI GATC 2 cut(s) 103, 123
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 255
CviAII CATG 2 cut(s) 65, 208
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 105, 125
DpnII GATC 2 cut(s) 103, 123
Eco147I AGGCCT 1 cut(s) 78
FaeI CATG 2 cut(s) 68, 211
FaiI YATR 6 cut(s) 66, 209, 226, 228, 242, 297
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 2 cut(s) 64, 207
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 2 cut(s) 74, 258
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 2 cut(s) 68, 211
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 84, 139
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 188, 205, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 68, 211
Kzo9I GATC 2 cut(s) 103, 123
LpnPI CCDG 4 cut(s) 76, 95, 239, 313
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 3 cut(s) 148, 208, 220
MaeI CTAG 2 cut(s) 74, 258
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 105, 125
MboI GATC 2 cut(s) 103, 123
MboII GAAGA 3 cut(s) 26, 133, 205
MluCI AATT 1 cut(s) 68
MnlI CCTC 3 cut(s) 7, 157, 229
MseI TTAA 2 cut(s) 153, 276
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 2 cut(s) 103, 123
NlaIII CATG 2 cut(s) 68, 211
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 153, 276
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 103, 123
SetI ASST 5 cut(s) 131, 149, 255, 268, 289
SfaNI GCATC 3 cut(s) 148, 208, 220
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 78
SspMI CTAG 2 cut(s) 74, 258
StuI AGGCCT 1 cut(s) 78
TaaI ACNGT 2 cut(s) 84, 139
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 153, 276
Tru9I TTAA 2 cut(s) 153, 276
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 68
XspI CTAG 2 cut(s) 74, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.