RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751 |
| rosa_roxburghii | Rroxscaffold_2G00077860 |
| rosa_samantha | Rh4DG044400 Rh5AG228100 Rh7DG174300 |
| rosa_wichuraiana | Rw4G025520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 276 |
| AciI | CCGC | 1 cut(s) | 391 |
| AclI | AACGTT | 1 cut(s) | 230 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 27, 56, 276, 305 |
| AgsI | TTSAA | 5 cut(s) | 15, 86, 107, 227, 235 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 156, 188 |
| AluBI | AGCT | 2 cut(s) | 11, 214 |
| AluI | AGCT | 2 cut(s) | 11, 214 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 435 |
| AspLEI | GCGC | 1 cut(s) | 325 |
| AsuC2I | CCSGG | 1 cut(s) | 300 |
| AsuII | TTCGAA | 1 cut(s) | 286 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 404, 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BciVI | GTATCC | 1 cut(s) | 405 |
| BcnI | CCSGG | 1 cut(s) | 300 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfuI | GTATCC | 1 cut(s) | 405 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 121 |
| Bpu14I | TTCGAA | 1 cut(s) | 286 |
| BpuMI | CCSGG | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 299 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 27, 56, 276, 305 |
| Bse1I | ACTGG | 2 cut(s) | 32, 281 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 299 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 27, 56, 276, 305 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseMII | CTCAG | 2 cut(s) | 21, 149 |
| BseNI | ACTGG | 2 cut(s) | 32, 281 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 27, 56, 276, 305 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmI | GAATGC | 1 cut(s) | 400 |
| Bsp119I | TTCGAA | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 374 |
| BspACI | CCGC | 1 cut(s) | 391 |
| BspCNI | CTCAG | 2 cut(s) | 20, 148 |
| BspT104I | TTCGAA | 1 cut(s) | 286 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BsrI | ACTGG | 2 cut(s) | 32, 281 |
| BssECI | CCNNGG | 1 cut(s) | 299 |
| BssMI | GATC | 1 cut(s) | 374 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| BstBI | TTCGAA | 1 cut(s) | 286 |
| BstC8I | GCNNGC | 1 cut(s) | 216 |
| BstDEI | CTNAG | 3 cut(s) | 7, 135, 364 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstHHI | GCGC | 1 cut(s) | 325 |
| BstKTI | GATC | 1 cut(s) | 377 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 1 cut(s) | 374 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BsuI | GTATCC | 1 cut(s) | 405 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 2 cut(s) | 25, 274 |
| Cac8I | GCNNGC | 1 cut(s) | 216 |
| CfoI | GCGC | 1 cut(s) | 325 |
| CviAII | CATG | 2 cut(s) | 40, 260 |
| CviJI | RGCY | 5 cut(s) | 11, 177, 214, 280, 436 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 177, 214, 280, 436 |
| DdeI | CTNAG | 3 cut(s) | 7, 135, 364 |
| DpnI | GATC | 1 cut(s) | 376 |
| DpnII | GATC | 1 cut(s) | 374 |
| EciI | GGCGGA | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| FaeI | CATG | 2 cut(s) | 43, 263 |
| FaiI | YATR | 8 cut(s) | 41, 93, 146, 148, 150, 210, 261, 342 |
| FatI | CATG | 2 cut(s) | 39, 259 |
| FokI | GGATG | 1 cut(s) | 143 |
| GlaI | GCGC | 1 cut(s) | 324 |
| HapII | CCGG | 1 cut(s) | 299 |
| HhaI | GCGC | 1 cut(s) | 325 |
| Hin1II | CATG | 2 cut(s) | 43, 263 |
| Hin6I | GCGC | 1 cut(s) | 323 |
| HinP1I | GCGC | 1 cut(s) | 323 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 1 cut(s) | 46 |
| HpaII | CCGG | 1 cut(s) | 299 |
| Hpy188I | TCNGA | 2 cut(s) | 138, 441 |
| Hpy188III | TCNNGA | 1 cut(s) | 378 |
| HpyAV | CCTTC | 1 cut(s) | 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4IV | ACGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 2 cut(s) | 218, 242 |
| HpyF3I | CTNAG | 3 cut(s) | 7, 135, 364 |
| HpySE526I | ACGT | 1 cut(s) | 230 |
| Hsp92II | CATG | 2 cut(s) | 43, 263 |
| HspAI | GCGC | 1 cut(s) | 323 |
| Kzo9I | GATC | 1 cut(s) | 374 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 5 cut(s) | 13, 34, 262, 312, 431 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeII | ACGT | 1 cut(s) | 230 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 1 cut(s) | 376 |
| MboI | GATC | 1 cut(s) | 374 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MlyI | GAGTC | 1 cut(s) | 40 |
| MnlI | CCTC | 1 cut(s) | 60 |
| MroXI | GAANNNNTTC | 1 cut(s) | 435 |
| MseI | TTAA | 3 cut(s) | 96, 192, 422 |
| MspI | CCGG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| Mva1269I | GAATGC | 1 cut(s) | 400 |
| NciI | CCSGG | 1 cut(s) | 300 |
| NdeII | GATC | 1 cut(s) | 374 |
| NlaIII | CATG | 2 cut(s) | 43, 263 |
| NspV | TTCGAA | 1 cut(s) | 286 |
| PctI | GAATGC | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 1 cut(s) | 435 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 276 |
| PleI | GAGTC | 1 cut(s) | 40 |
| PpsI | GAGTC | 1 cut(s) | 40 |
| Psp1406I | AACGTT | 1 cut(s) | 230 |
| SaqAI | TTAA | 3 cut(s) | 96, 192, 422 |
| Sau3AI | GATC | 1 cut(s) | 374 |
| SchI | GAGTC | 1 cut(s) | 40 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 4 cut(s) | 13, 216, 233, 363 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SfuI | TTCGAA | 1 cut(s) | 286 |
| SsiI | CCGC | 1 cut(s) | 391 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TaiI | ACGT | 1 cut(s) | 233 |
| TaqI | TCGA | 2 cut(s) | 286, 379 |
| Tru1I | TTAA | 3 cut(s) | 96, 192, 422 |
| Tru9I | TTAA | 3 cut(s) | 96, 192, 422 |
| TscAI | CASTG | 2 cut(s) | 32, 281 |
| TspDTI | ATGAA | 2 cut(s) | 213, 444 |
| TspRI | CASTG | 2 cut(s) | 32, 281 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 276 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XmnI | GAANNNNTTC | 1 cut(s) | 435 |