Rh7DG174300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018948
Physical Location & Seq
Forward (+)
15973336 .. 15974622
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG174300.1

Sequence Viewer

Length: 402 bp
ATGAAGAACGGACTCTATAGGAGCAGGTTGCACTTGCAGCCATGGACTGCCAGTGTCTTGATGTTTCAAAGGATTACAGTTTTTCAAACGTTTAAAAATGCAACTCTATTATTTCCACATGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACTGGGGATTGGTGTTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTAGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCCTGGAAATCTTTCTATTGTGAAATTGATGAAGAATTTACAAGCAATCTGGCAAGTGTTCCTGGTGTTTTATCTTTTCAGCCAGACAAGAGTTATGATTCAGATAATAAAAACTATGGAGGTTTTACTCTTTCTTAG

Protein Analysis

133

Amino Acids

15.31

Weight (kDa)

8.87

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 44 - 129 3.8e-31 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018948)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751
rosa_roxburghii Rroxscaffold_2G00077860
rosa_samantha Rh4DG044400 Rh5AG228100 Rh7DG174300
rosa_wichuraiana Rw4G025520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 135
AclI AACGTT 1 cut(s) 89
AcsI RAATTY 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 2 cut(s) 68, 86
AjnI CCWGG 2 cut(s) 266, 325
AleI CACNNNNGTG 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 145
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 268, 327
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 268, 327
BmrFI CCNGG 2 cut(s) 268, 327
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 3 cut(s) 51, 140, 162
BseBI CCWGG 2 cut(s) 268, 327
BseDI CCNNGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 135
BseNI ACTGG 3 cut(s) 51, 140, 162
BseXI GCAGC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 41
BspMI ACCTGC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 145
BsrI ACTGG 3 cut(s) 51, 140, 162
BssECI CCNNGG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 268, 327
Bst4CI ACNGT 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 223, 399
BstDSI CCRYGG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 268, 327
BstSCI CCNGG 2 cut(s) 266, 325
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 58, 133
BveI ACCTGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 184
CviAII CATG 3 cut(s) 42, 119, 260
CviJI RGCY 3 cut(s) 40, 139, 346
CviKI_1 RGCY 3 cut(s) 40, 139, 346
DdeI CTNAG 2 cut(s) 223, 399
DraI TTTAAA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 266, 325
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 45, 122, 263
FaiI YATR 9 cut(s) 18, 43, 120, 201, 254, 256, 261, 360, 381
FatI CATG 3 cut(s) 41, 118, 259
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 45, 122, 263
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 2 cut(s) 12, 362
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 31, 37, 101, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 223, 399
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 3 cut(s) 45, 122, 263
HspAI GCGC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 229
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 2 cut(s) 16, 308
MluCI AATT 2 cut(s) 288, 299
MlyI GAGTC 1 cut(s) 6
MnlI CCTC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 268, 327
MvaI CCWGG 2 cut(s) 268, 327
MwoI GCNNNNNNNGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 41
NlaIII CATG 3 cut(s) 45, 122, 263
NspV TTCGAA 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
Psp1406I AACGTT 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 266, 325
PspGI CCWGG 2 cut(s) 266, 325
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 38
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 268, 327
SetI ASST 4 cut(s) 29, 92, 222, 388
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 247
Sse9I AATT 2 cut(s) 288, 299
StyD4I CCNGG 2 cut(s) 266, 325
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 288, 299
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 58, 140
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 309
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 58, 140
Van91I CCANNNNNTGG 1 cut(s) 135
XapI RAATTY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.