Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018948

Physical Location & Seq

Genomic Coordinates Forward (+)

27424822 .. 27425902

Gene Structure 1081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGACTCCTCCACAAGGGGTCATTTCCAAACAAGAAGTTATTGAATACTATATTAAAACCGTTCAAAGAGTTTTGGGCAATGACAAGGATGCTCAGATGTGTATATACAATGCTTCTTGGGATACTCATTTTGGCTTTTGCTGTGATGTTAATGATGAAACTTCCCAGAAGCTTGCATACGATGAAGTTTCTATGAGGATTACAGTTTTTCAAACGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCCTGGAAATCTTTCTGTTGTGAAATTGATGAAGAATCTACAAGCAATCTGGCAAGTGTTCCTGGTGTTTTATCTTTTTAGCCAGACAAGAGTTATGACTCAGATAATAAAAACTATGGAGGTTTTACTCTTTCTTAGCTTGGATTTTACGGTTCATTCGTTAAAATGGTCTGGTTATGTTTGTAATTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

152

Amino Acids

17.93

Weight (kDa)

7.62

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 60	3.3e-23	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018948)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751
rosa_roxburghii	Rroxscaffold_2G00077860
rosa_samantha	Rh4DG044400 Rh5AG228100 Rh7DG174300
rosa_wichuraiana	Rw4G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	47, 68, 215
AjnI	CCWGG	2 cut(s)	265, 324
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	175, 402
AluI	AGCT	2 cut(s)	175, 402
Asp700I	GAANNNNTTC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BciT130I	CCWGG	2 cut(s)	267, 326
BciVI	GTATCC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	267, 326
BmrFI	CCNGG	2 cut(s)	267, 326
BmsI	GCATC	2 cut(s)	82, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	267, 326
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	110, 377
BslI	CCNNNNNNNGG	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	109, 376
BsrDI	GCAATG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	267, 326
Bst4CI	ACNGT	3 cut(s)	64, 208, 415
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	96, 363, 398
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	267, 326
BstSCI	CCNGG	2 cut(s)	265, 324
BsuI	GTATCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	177
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	4 cut(s)	138, 175, 345, 402
CviKI_1	RGCY	4 cut(s)	138, 175, 345, 402
DdeI	CTNAG	3 cut(s)	96, 363, 398
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	265, 324
FaeI	CATG	1 cut(s)	262
FatI	CATG	1 cut(s)	258
FokI	GGATG	1 cut(s)	104
Hin1II	CATG	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	7, 298, 361
Hpy188I	TCNGA	2 cut(s)	99, 366
HpyCH4III	ACNGT	3 cut(s)	64, 208, 415
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	179, 241
HpyF3I	CTNAG	3 cut(s)	96, 363, 398
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	182, 252, 279, 298, 311, 338, 359, 420
LweI	GCATC	2 cut(s)	82, 228
MaeII	ACGT	1 cut(s)	218
MboII	GAAGA	1 cut(s)	307
MluCI	AATT	2 cut(s)	287, 448
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	3 cut(s)	21, 192, 376
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	3 cut(s)	57, 153, 425
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	267, 326
MvaI	CCWGG	2 cut(s)	267, 326
NlaIII	CATG	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	265
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	265, 324
PspGI	CCWGG	2 cut(s)	265, 324
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	57, 153, 425
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	267, 326
SetI	ASST	4 cut(s)	177, 221, 387, 404
SfaNI	GCATC	2 cut(s)	82, 228
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	287, 448
StyD4I	CCNGG	2 cut(s)	265, 324
TaaI	ACNGT	3 cut(s)	64, 208, 415
TaiI	ACGT	1 cut(s)	221
TasI	AATT	2 cut(s)	287, 448
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	3 cut(s)	57, 153, 425
Tru9I	TTAA	3 cut(s)	57, 153, 425
TspDTI	ATGAA	4 cut(s)	174, 201, 308, 407
XagI	CCTNNNNNAGG	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.