RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751 |
| rosa_roxburghii | Rroxscaffold_2G00077860 |
| rosa_samantha | Rh4DG044400 Rh5AG228100 Rh7DG174300 |
| rosa_wichuraiana | Rw4G025520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 560, 568 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 31, 264 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 31, 56, 264, 293 |
| AgsI | TTSAA | 4 cut(s) | 15, 86, 107, 215 |
| AjnI | CCWGG | 2 cut(s) | 395, 457 |
| AleI | CACNNNNGTG | 1 cut(s) | 376 |
| AluBI | AGCT | 4 cut(s) | 11, 132, 202, 518 |
| AluI | AGCT | 4 cut(s) | 11, 132, 202, 518 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 404 |
| AspLEI | GCGC | 1 cut(s) | 313 |
| AsuC2I | CCSGG | 1 cut(s) | 288 |
| AsuII | TTCGAA | 2 cut(s) | 222, 274 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 2 cut(s) | 397, 459 |
| BcnI | CCSGG | 1 cut(s) | 288 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| Bme1390I | CCNGG | 3 cut(s) | 288, 397, 459 |
| BmrFI | CCNGG | 3 cut(s) | 288, 397, 459 |
| BmsI | GCATC | 1 cut(s) | 358 |
| Bpu14I | TTCGAA | 2 cut(s) | 222, 274 |
| BpuMI | CCSGG | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 31, 56, 264, 293 |
| Bse1I | ACTGG | 2 cut(s) | 32, 269 |
| BseBI | CCWGG | 2 cut(s) | 397, 459 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseGI | GGATG | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 31, 56, 264, 293 |
| BseMII | CTCAG | 1 cut(s) | 510 |
| BseNI | ACTGG | 2 cut(s) | 32, 269 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiSI | CCGG | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 31, 56, 264, 293 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| Bsp119I | TTCGAA | 2 cut(s) | 222, 274 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| BspCNI | CTCAG | 1 cut(s) | 509 |
| BspT104I | TTCGAA | 2 cut(s) | 222, 274 |
| BsrI | ACTGG | 2 cut(s) | 32, 269 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| Bst2UI | CCWGG | 2 cut(s) | 397, 459 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| BstBI | TTCGAA | 2 cut(s) | 222, 274 |
| BstDEI | CTNAG | 3 cut(s) | 7, 352, 496 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 1 cut(s) | 36 |
| BstHHI | GCGC | 1 cut(s) | 313 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstNI | CCWGG | 2 cut(s) | 397, 459 |
| BstSCI | CCNGG | 3 cut(s) | 286, 395, 457 |
| BtsCI | GGATG | 1 cut(s) | 36 |
| BtsIMutI | CAGTG | 2 cut(s) | 25, 262 |
| CfoI | GCGC | 1 cut(s) | 313 |
| CviAII | CATG | 4 cut(s) | 40, 248, 389, 544 |
| CviJI | RGCY | 7 cut(s) | 11, 132, 165, 202, 268, 478, 518 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 132, 165, 202, 268, 478, 518 |
| DdeI | CTNAG | 3 cut(s) | 7, 352, 496 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| EcoRII | CCWGG | 2 cut(s) | 395, 457 |
| FaeI | CATG | 4 cut(s) | 43, 251, 392, 547 |
| FatI | CATG | 4 cut(s) | 39, 247, 388, 543 |
| FokI | GGATG | 1 cut(s) | 43 |
| GlaI | GCGC | 1 cut(s) | 312 |
| HapII | CCGG | 1 cut(s) | 287 |
| HhaI | GCGC | 1 cut(s) | 313 |
| Hin1II | CATG | 4 cut(s) | 43, 251, 392, 547 |
| Hin6I | GCGC | 1 cut(s) | 311 |
| HinP1I | GCGC | 1 cut(s) | 311 |
| HindIII | AAGCTT | 2 cut(s) | 130, 200 |
| HinfI | GANTC | 3 cut(s) | 46, 428, 494 |
| HpaII | CCGG | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 1 cut(s) | 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 3 cut(s) | 230, 371, 540 |
| HpyF3I | CTNAG | 3 cut(s) | 7, 352, 496 |
| Hsp92II | CATG | 4 cut(s) | 43, 251, 392, 547 |
| HspAI | GCGC | 1 cut(s) | 311 |
| LmnI | GCTCC | 1 cut(s) | 515 |
| LpnPI | CCDG | 9 cut(s) | 13, 209, 250, 300, 382, 409, 444, 471, 492 |
| LweI | GCATC | 1 cut(s) | 358 |
| MaeIII | GTNAC | 1 cut(s) | 301 |
| MboII | GAAGA | 1 cut(s) | 437 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 4 cut(s) | 136, 417, 439, 563 |
| MlyI | GAGTC | 2 cut(s) | 40, 488 |
| MmeI | TCCRAC | 1 cut(s) | 533 |
| MnlI | CCTC | 1 cut(s) | 60 |
| MroXI | GAANNNNTTC | 1 cut(s) | 404 |
| MseI | TTAA | 3 cut(s) | 96, 135, 180 |
| MslI | CAYNNNNRTG | 1 cut(s) | 376 |
| MspI | CCGG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 3 cut(s) | 288, 397, 459 |
| MvaI | CCWGG | 2 cut(s) | 397, 459 |
| NciI | CCSGG | 1 cut(s) | 288 |
| NlaIII | CATG | 4 cut(s) | 43, 251, 392, 547 |
| NspV | TTCGAA | 2 cut(s) | 222, 274 |
| OliI | CACNNNNGTG | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 404 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 31, 264 |
| PfoI | TCCNGGA | 1 cut(s) | 395 |
| PleI | GAGTC | 2 cut(s) | 40, 488 |
| PpsI | GAGTC | 2 cut(s) | 40, 488 |
| PsiI | TTATAA | 2 cut(s) | 560, 568 |
| Psp6I | CCWGG | 2 cut(s) | 395, 457 |
| PspGI | CCWGG | 2 cut(s) | 395, 457 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 438, 470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 376 |
| SaqAI | TTAA | 3 cut(s) | 96, 135, 180 |
| SchI | GAGTC | 2 cut(s) | 40, 488 |
| ScrFI | CCNGG | 3 cut(s) | 288, 397, 459 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 5 cut(s) | 13, 134, 204, 351, 520 |
| SfaNI | GCATC | 1 cut(s) | 358 |
| SfuI | TTCGAA | 2 cut(s) | 222, 274 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 376 |
| Sse9I | AATT | 4 cut(s) | 136, 417, 439, 563 |
| StyD4I | CCNGG | 3 cut(s) | 286, 395, 457 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TaqI | TCGA | 2 cut(s) | 222, 274 |
| TasI | AATT | 4 cut(s) | 136, 417, 439, 563 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| Tru1I | TTAA | 3 cut(s) | 96, 135, 180 |
| Tru9I | TTAA | 3 cut(s) | 96, 135, 180 |
| TscAI | CASTG | 2 cut(s) | 32, 269 |
| TspDTI | ATGAA | 3 cut(s) | 201, 438, 560 |
| TspRI | CASTG | 2 cut(s) | 32, 269 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 31, 264 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XmnI | GAANNNNTTC | 1 cut(s) | 404 |