Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018948

Physical Location & Seq

Genomic Coordinates Forward (+)

7261893 .. 7262374

Gene Structure 482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGATAAACCGGGGATTGGTGTTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTAGGAAATGAGAAAGATGCACAAATGTGTACATATCATGTTTCCTGGAAATCTTTCTGTTGTGAAATTGATGAAGAATCTACAAGCAATCTGGTGTTCCTGGTGTTTTATCTTTTCAGCCAGACAAGAGTTATGACTCAGATAATAAAAACTATGGAGGTTTTACTCTTTCTTAGCTTGGATTTTACGGTTCATTCGTTAAAATTGTCTGGTTATGTTTGTAATTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

6.04

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 56	1.2e-17	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018948)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751
rosa_roxburghii	Rroxscaffold_2G00077860
rosa_samantha	Rh4DG044400 Rh5AG228100 Rh7DG174300
rosa_wichuraiana	Rw4G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	119, 174
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	12
BciT130I	CCWGG	2 cut(s)	121, 176
BcnI	CCSGG	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	12, 121, 176
BmrFI	CCNGG	3 cut(s)	12, 121, 176
BmsI	GCATC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	121, 176
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	121, 176
Bst4CI	ACNGT	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	104
BstDEI	CTNAG	3 cut(s)	76, 213, 248
BstHHI	GCGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	121, 176
BstSCI	CCNGG	3 cut(s)	10, 119, 174
CfoI	GCGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	2 cut(s)	195, 252
CviKI_1	RGCY	2 cut(s)	195, 252
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	76, 213, 248
EcoRII	CCWGG	2 cut(s)	119, 174
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	54, 109, 114, 209, 230, 291
FatI	CATG	1 cut(s)	112
GlaI	GCGC	1 cut(s)	36
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	2 cut(s)	152, 211
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	76, 213, 248
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	24, 106, 133, 152, 161, 188, 209, 270
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	3 cut(s)	141, 278, 298
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	100
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	12, 121, 176
MvaI	CCWGG	2 cut(s)	121, 176
NciI	CCSGG	1 cut(s)	12
NlaIII	CATG	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	119
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	119, 174
PspGI	CCWGG	2 cut(s)	119, 174
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	275
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	12, 121, 176
SetI	ASST	3 cut(s)	75, 237, 254
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	3 cut(s)	141, 278, 298
StyD4I	CCNGG	3 cut(s)	10, 119, 174
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	3 cut(s)	141, 278, 298
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	162, 257
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.