Rroxscaffold_2G00077860

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018948
Physical Location & Seq
Reverse (-)
1325492 .. 1328897
3406 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00077860.1

Sequence Viewer

Length: 510 bp
ATGTTGGTTTCTATAGTGACAAGGATGCTCAGATGTGTATATACAATGCTTCTTGGGATACTCATTTTGGCTTTTGCTGTGATGTTAATGATGAAACTTCCTAGAAGCTTGCACGATTACAGTTTTTCAAACGTTCAAAATGCAACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGGGATTGGTGTTGTTACAAAGGGGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCCTGGAAATCTTTTTGTTGTGAAATTGATGAAGAATCTACAAGCAATCTGGTGTTCCTGGTGTTTTATCTTTTCAGCCAGACAAGAGTTATGACTCAGATAATAAAAACTATGGAGAGCAAGGAAGTAGAAGATAAGTGCAGAATGGTGACAGGTGACTTTTTTCTCTGTCTGCAAAGTGAAGGGGAGTTTCCAAGATTGTGA

Protein Analysis

169

Amino Acids

19.51

Weight (kDa)

7.59

Isoelectric Point (pI)

26.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 58 - 119 7.3e-23 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018948)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0338951 RchiOBHm_Chr1g0343161 RchiOBHm_Chr5g0033051 RchiOBHm_Chr7g0235751
rosa_roxburghii Rroxscaffold_2G00077860
rosa_samantha Rh4DG044400 Rh5AG228100 Rh7DG174300
rosa_wichuraiana Rw4G025520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AclI AACGTT 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 177, 206
AgsI TTSAA 2 cut(s) 129, 137
AjnI CCWGG 2 cut(s) 308, 363
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 466, 473
AsuII TTCGAA 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 310, 365
BciVI GTATCC 1 cut(s) 51
BcnI CCSGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 201, 310, 365
BmrFI CCNGG 3 cut(s) 201, 310, 365
BmsI GCATC 2 cut(s) 15, 271
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 206
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 2 cut(s) 310, 365
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 177, 206
BseMII CTCAG 2 cut(s) 43, 416
BseNI ACTGG 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 466
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 177, 206
Bsp119I TTCGAA 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 42, 415
BspT104I TTCGAA 1 cut(s) 187
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 310, 365
Bst4CI ACNGT 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 29, 402
BstF5I GGATG 1 cut(s) 30
BstNI CCWGG 2 cut(s) 310, 365
BstSCI CCNGG 3 cut(s) 199, 308, 363
BstSFI CTRYAG 1 cut(s) 12
BsuI GTATCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 110
CviAII CATG 1 cut(s) 302
CviJI RGCY 4 cut(s) 71, 108, 181, 384
CviKI_1 RGCY 4 cut(s) 71, 108, 181, 384
DdeI CTNAG 2 cut(s) 29, 402
EcoRII CCWGG 2 cut(s) 308, 363
FaeI CATG 1 cut(s) 305
FaiI YATR 9 cut(s) 14, 40, 42, 243, 296, 298, 303, 398, 419
FatI CATG 1 cut(s) 301
FokI GGATG 1 cut(s) 37
FspBI CTAG 1 cut(s) 102
HapII CCGG 1 cut(s) 200
Hin1II CATG 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 2 cut(s) 341, 400
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 466, 473
Hpy188I TCNGA 2 cut(s) 32, 405
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 112, 143, 284, 447, 481
HpyF3I CTNAG 2 cut(s) 29, 402
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 305
LpnPI CCDG 9 cut(s) 163, 213, 295, 322, 341, 350, 377, 398, 444
LweI GCATC 2 cut(s) 15, 271
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 16, 214, 454, 461
MboII GAAGA 2 cut(s) 350, 449
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 394
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 201, 310, 365
MvaI CCWGG 2 cut(s) 310, 365
NciI CCSGG 1 cut(s) 201
NlaIII CATG 1 cut(s) 305
NmuCI GTSAC 3 cut(s) 16, 454, 461
NspV TTCGAA 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 308
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 308, 363
PspGI CCWGG 2 cut(s) 308, 363
RseI CAYNNNNRTG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 86
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 201, 310, 365
SetI ASST 4 cut(s) 110, 135, 264, 463
SfaNI GCATC 2 cut(s) 15, 271
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 1 cut(s) 330
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 199, 308, 363
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 187
TasI AATT 1 cut(s) 330
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 3 cut(s) 16, 454, 461
Tsp45I GTSAC 3 cut(s) 16, 454, 461
TspDTI ATGAA 2 cut(s) 107, 351
TspRI CASTG 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 177
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.