Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008323

Physical Location & Seq

Genomic Coordinates Forward (+)

43124016 .. 43125212

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCATTTGGCTGCTCAAGCTGGTGTCAGGTATGCCATGGAGAACCCTGGTTCATATGTTCATAGTAATATAGCTGGTCTTGTTAATCTGCTTGAAGTTTGTAAGAATGCAAATCCACAACCTGCAATTGTTTGGGCTAGCTCTAGTTCTGTCTATGGACTTAATACTAAGGTACCCTTTTCGGAGAGAGACCGCACTGATCAGCCTGCTAGTTTGTATGCTGCTACTAAGAAAGCCGGTGAAGAGATTGCGCATACTTATAATCATATCTATGGTCTTTCGCTTACCGGCTTGAGGGATATACTGAAGGGGAAGACTATTCCCATTTTTGAAGCGGCTAATCATGGCACGGTTGCTAGGGATTTTACCTACATTGATGATATTGTGAAAGGATGCTTGGCGTCGTTGGACACTGCAGAGAAGAGTACTGGGAGTGGGGGGAAGAAGAAAGGTCCTGCCCAGTTGAGGGTTTTCAATTTGGGGAATACGTCTCCTGTGCCAGTTTCGGATCTTGTTACCATTTTGGAGAGGCTTTTGAAGGTCAAGGCCAAGAGGAACATATTGAAGTTGCCACGTAATGGGGATGTTCAGTTTACTCACGCAAATATCAGCTCCGCGCAGAGGGAACTTGGGTATAAGCCCACAACCGATCTGCAGACGGGGTTGAAGAAATTCGTTAGGTGGTACCTGACTTACTATTCTGGTGGGAAGAAGGCTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

241

Amino Acids

26.17

Weight (kDa)

9.63

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDP_Man_Dehyd	PF16363	1 - 95	2.1e-20	GDP-mannose 4,6 dehydratase
Epimerase	PF01370	1 - 99	1.5e-19	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02000 AT4G00110
fragaria_vesca	FvH4_7g11540
malus_domestica	MD07G1119800.v1.1 MD07G1120100.v1.1
prunus_persica	Prupe.2G143800_v2.0.a1
pyrus_communis	pycom02g16850 pycom07g10500
rosa_chinensis	RchiOBHm_Chr1g0349991
rosa_laevigata	RLG00000028511
rosa_multiflora	Rmu_sc0003674.1_g000001 Rmu_sc0005220.1_g000011
rosa_roxburghii	Rroxscaffold_4G00305170 Rroxscaffold_4G00305230
rosa_rugosa	Rorug01G0207600 Rorug05G0318700
rosa_samantha	Rh1AG224100 Rh1BG191300 Rh1CG208800 Rh1DG219900
rosa_wichuraiana	Rw0G007580 Rw1G019130 Rw1G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	130
Acc65I	GGTACC	2 cut(s)	172, 684
AccB1I	GGYRCC	2 cut(s)	172, 684
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccII	CGCG	1 cut(s)	617
AciI	CCGC	3 cut(s)	193, 335, 615
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	174, 427, 686
AfiI	CCNNNNNNNGG	5 cut(s)	294, 465, 466, 578, 621
AgsI	TTSAA	6 cut(s)	95, 332, 475, 538, 565, 667
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	20, 74, 141, 612
AluI	AGCT	4 cut(s)	20, 74, 141, 612
Alw26I	GTCTC	2 cut(s)	183, 495
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	11, 221, 716
ApoI	RAATTY	1 cut(s)	671
Asp700I	GAANNNNTTC	1 cut(s)	671
Asp718I	GGTACC	2 cut(s)	172, 684
AspLEI	GCGC	2 cut(s)	253, 619
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	452
BaeI	ACNNNNGTAYC	2 cut(s)	156, 189
BanI	GGYRCC	2 cut(s)	172, 684
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	208, 703
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	183, 495
BfaI	CTAG	4 cut(s)	138, 144, 210, 357
BfmI	CTRYAG	2 cut(s)	414, 653
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	12, 222, 336, 717
BlsI	GCNGC	4 cut(s)	13, 223, 337, 718
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	174, 686
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	2 cut(s)	438, 454
BmsI	GCATC	1 cut(s)	383
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	2 cut(s)	438, 454
BpiI	GAAGAC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	36, 46
Bsc4I	CCNNNNNNNGG	5 cut(s)	294, 465, 466, 578, 621
Bse118I	RCCGGY	2 cut(s)	236, 287
Bse1I	ACTGG	3 cut(s)	433, 460, 500
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	36, 46
BseGI	GGATG	2 cut(s)	398, 589
BseLI	CCNNNNNNNGG	5 cut(s)	294, 465, 466, 578, 621
BseNI	ACTGG	3 cut(s)	433, 460, 500
BseXI	GCAGC	2 cut(s)	208, 703
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	2 cut(s)	172, 684
BsiSI	CCGG	2 cut(s)	237, 288
BslI	CCNNNNNNNGG	5 cut(s)	294, 465, 466, 578, 621
BsmAI	GTCTC	2 cut(s)	183, 495
BsmBI	CGTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	199, 508, 649
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	193, 335, 615
BspANI	GGCC	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	2 cut(s)	174, 686
BspMAI	CTGCAG	2 cut(s)	418, 657
BspMI	ACCTGC	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	516
BspT107I	GGYRCC	2 cut(s)	172, 684
BspTNI	GGTCTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	236, 287
BsrI	ACTGG	3 cut(s)	433, 460, 500
BssAI	RCCGGY	2 cut(s)	236, 287
BssECI	CCNNGG	2 cut(s)	36, 46
BssMI	GATC	3 cut(s)	199, 508, 649
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	237, 416
BstACI	GRCGYC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	139, 207, 721
BstDEI	CTNAG	2 cut(s)	168, 228
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	398, 589
BstFNI	CGCG	1 cut(s)	617
BstHHI	GCGC	2 cut(s)	253, 619
BstKTI	GATC	3 cut(s)	202, 511, 652
BstMAI	GTCTC	2 cut(s)	183, 495
BstMBI	GATC	3 cut(s)	199, 508, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	414, 653
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	208, 703
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	398, 589
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	195, 411
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	139, 207, 721
CfoI	GCGC	2 cut(s)	253, 619
Cfr10I	RCCGGY	2 cut(s)	236, 287
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	173, 426, 685
CviAII	CATG	2 cut(s)	37, 344
CviQI	GTAC	3 cut(s)	173, 426, 685
DdeI	CTNAG	2 cut(s)	168, 228
DpnI	GATC	3 cut(s)	201, 510, 651
DpnII	GATC	3 cut(s)	199, 508, 649
Eam1104I	CTCTTC	2 cut(s)	237, 416
EarI	CTCTTC	2 cut(s)	237, 416
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	2 cut(s)	40, 347
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	36, 343
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	12, 222, 336, 717
FokI	GGATG	2 cut(s)	405, 596
Fsp4HI	GCNGC	4 cut(s)	12, 222, 336, 717
FspBI	CTAG	4 cut(s)	138, 144, 210, 357
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	2 cut(s)	252, 618
GluI	GCNGC	4 cut(s)	12, 222, 336, 717
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	237, 288
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	2 cut(s)	253, 619
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	40, 347
Hin6I	GCGC	2 cut(s)	251, 617
HinP1I	GCGC	2 cut(s)	251, 617
HpaII	CCGG	2 cut(s)	237, 288
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	2 cut(s)	184, 508
Hpy8I	GTNNAC	1 cut(s)	594
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	301, 532, 706
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	488, 574
HpyCH4V	TGCA	5 cut(s)	4, 110, 125, 416, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	168, 228
HpySE526I	ACGT	2 cut(s)	488, 574
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	40, 347
HspAI	GCGC	2 cut(s)	251, 617
KpnI	GGTACC	2 cut(s)	176, 688
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 508, 649
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	2 cut(s)	208, 703
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	4 cut(s)	138, 144, 210, 357
MaeII	ACGT	2 cut(s)	488, 574
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	201, 510, 651
MboI	GATC	3 cut(s)	199, 508, 649
MboII	GAAGA	7 cut(s)	254, 325, 433, 454, 457, 679, 721
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	3 cut(s)	126, 475, 671
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	5 cut(s)	288, 459, 522, 546, 615
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	2 cut(s)	84, 162
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	237, 288
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	3 cut(s)	199, 508, 649
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	40, 347
NlaIV	GGNNCC	2 cut(s)	174, 686
NsbI	TGCGCA	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	4 cut(s)	13, 223, 337, 718
Ppu21I	YACGTR	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	174, 686
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	418, 657
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	174, 427, 686
RsaNI	GTAC	3 cut(s)	173, 426, 685
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	84, 162
SatI	GCNGC	4 cut(s)	12, 222, 336, 717
Sau3AI	GATC	3 cut(s)	199, 508, 649
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	2 cut(s)	414, 653
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	15, 292
SmoI	CTYRAG	2 cut(s)	15, 292
Sse9I	AATT	3 cut(s)	126, 475, 671
SsiI	CCGC	3 cut(s)	193, 335, 615
SspMI	CTAG	4 cut(s)	138, 144, 210, 357
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	491, 577
TasI	AATT	3 cut(s)	126, 475, 671
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	84, 162
Tru9I	TTAA	2 cut(s)	84, 162
TscAI	CASTG	2 cut(s)	202, 418
TseI	GCWGC	3 cut(s)	11, 221, 716
TspDTI	ATGAA	2 cut(s)	42, 50
TspRI	CASTG	2 cut(s)	202, 418
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	4 cut(s)	138, 144, 210, 357
ZrmI	AGTACT	1 cut(s)	427
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.