Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008323

Physical Location & Seq

Genomic Coordinates Reverse (-)

37807310 .. 37808011

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGTGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCCCATTTAGTAATACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTATTTTTCTCTCCAACTGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAATGCTGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCACTTGTTCACGAGCAGCAGCTCTTTGGTGGTTTTGATATGATAGTTTATGGTTGTCATGACCCTGATATTGCACTCGATCTGAATTCAGAAACCCTCAAACTTTCCTATTCTTTCTTTCATCTCTATCTCCATCCAGAAACTCTCAAACTTTCCTATTCTTTCTTTCATCCAGAAACCCTCAAACTTCCATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

233

Amino Acids

27.04

Weight (kDa)

4.73

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02000 AT4G00110
fragaria_vesca	FvH4_7g11540
malus_domestica	MD07G1119800.v1.1 MD07G1120100.v1.1
prunus_persica	Prupe.2G143800_v2.0.a1
pyrus_communis	pycom02g16850 pycom07g10500
rosa_chinensis	RchiOBHm_Chr1g0349991
rosa_laevigata	RLG00000028511
rosa_multiflora	Rmu_sc0003674.1_g000001 Rmu_sc0005220.1_g000011
rosa_roxburghii	Rroxscaffold_4G00305170 Rroxscaffold_4G00305230
rosa_rugosa	Rorug01G0207600 Rorug05G0318700
rosa_samantha	Rh1AG224100 Rh1BG191300 Rh1CG208800 Rh1DG219900
rosa_wichuraiana	Rw0G007580 Rw1G019130 Rw1G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	145, 161, 176, 182, 340
AhdI	GACNNNNNGTC	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	2 cut(s)	247, 487
ApeKI	GCWGC	4 cut(s)	421, 490, 517, 520
ApoI	RAATTY	1 cut(s)	586
AsuHPI	GGTGA	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	408, 477, 529, 532
BccI	CCATC	2 cut(s)	23, 642
BclI	TGATCA	3 cut(s)	265, 346, 367
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	4 cut(s)	422, 491, 518, 521
BlsI	GCNGC	4 cut(s)	423, 492, 519, 522
BmeRI	GACNNNNNGTC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	120
BseGI	GGATG	5 cut(s)	10, 121, 289, 634, 670
BseJI	GATNNNNATC	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	408, 477, 529, 532
BsmAI	GTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	265, 346, 367, 580
BspHI	TCATGA	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	4 cut(s)	265, 346, 367, 580
BssSI	CACGAG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	278, 396, 449
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstF5I	GGATG	5 cut(s)	10, 121, 289, 634, 670
BstKTI	GATC	4 cut(s)	268, 349, 370, 583
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	265, 346, 367, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	4 cut(s)	408, 477, 529, 532
BtsCI	GGATG	5 cut(s)	10, 121, 289, 634, 670
CaiI	CAGNNNCTG	2 cut(s)	247, 487
CciI	TCATGA	1 cut(s)	559
CviAII	CATG	3 cut(s)	190, 269, 560
CviJI	RGCY	4 cut(s)	38, 312, 359, 523
CviKI_1	RGCY	4 cut(s)	38, 312, 359, 523
DpnI	GATC	4 cut(s)	267, 348, 369, 582
DpnII	GATC	4 cut(s)	265, 346, 367, 580
DraIII	CACNNNGTG	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	586
FaeI	CATG	3 cut(s)	193, 272, 563
FatI	CATG	3 cut(s)	189, 268, 559
FbaI	TGATCA	3 cut(s)	265, 346, 367
Fnu4HI	GCNGC	4 cut(s)	422, 491, 518, 521
FokI	GGATG	5 cut(s)	17, 128, 296, 621, 657
Fsp4HI	GCNGC	4 cut(s)	422, 491, 518, 521
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	4 cut(s)	422, 491, 518, 521
Hin1II	CATG	3 cut(s)	193, 272, 563
HinfI	GANTC	3 cut(s)	48, 121, 404
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	12, 511
Hpy188I	TCNGA	4 cut(s)	100, 403, 585, 592
Hpy188III	TCNNGA	5 cut(s)	365, 512, 560, 638, 674
Hpy8I	GTNNAC	2 cut(s)	12, 511
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	3 cut(s)	278, 396, 449
HpyCH4V	TGCA	2 cut(s)	424, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	193, 272, 563
Ksp22I	TGATCA	3 cut(s)	265, 346, 367
Kzo9I	GATC	4 cut(s)	265, 346, 367, 580
LpnPI	CCDG	4 cut(s)	294, 579, 651, 687
Lsp1109I	GCAGC	4 cut(s)	408, 477, 529, 532
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	4 cut(s)	267, 348, 369, 582
MboI	GATC	4 cut(s)	265, 346, 367, 580
MboII	GAAGA	3 cut(s)	87, 100, 399
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	586
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	9 cut(s)	62, 65, 78, 106, 373, 448, 511, 608, 692
MseI	TTAA	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	487
NdeII	GATC	4 cut(s)	265, 346, 367, 580
NlaIII	CATG	3 cut(s)	193, 272, 563
NspI	RCATGY	1 cut(s)	193
PagI	TCATGA	1 cut(s)	559
PciI	ACATGT	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	121, 404
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	423, 492, 519, 522
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	189
PstNI	CAGNNNCTG	2 cut(s)	247, 487
PsyI	GACNNNGTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	4 cut(s)	422, 491, 518, 521
Sau3AI	GATC	4 cut(s)	265, 346, 367, 580
SchI	GAGTC	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	3 cut(s)	294, 442, 525
Sse9I	AATT	1 cut(s)	586
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	278, 396, 449
TaqI	TCGA	1 cut(s)	579
TasI	AATT	1 cut(s)	586
TfiI	GAWTC	2 cut(s)	121, 404
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TseI	GCWGC	4 cut(s)	421, 490, 517, 520
TspDTI	ATGAA	2 cut(s)	611, 659
Tth111I	GACNNNGTC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.