Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Forward (+)

48257008 .. 48259105

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTTGAGAAATTGTTTTTGTGGTGGTCAATGGAGAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAGAGGTTCCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATGGCCCGAAAACAATACTAAGGACCCCCCTGGTATGATTCAGGTCTTTCTTGGTCATAGTGGAGGCCTTGATACTGAAGGAAACGAGCTCCCTCGTCTTGTCTATGTGTCTAGTGAGAAGAGGCCTGGCTTTTCACATCACAAGAAGGCTGGTGCCATGAATGCCTTGGTCCGCGTCTCTGGAGTGCTCACCAATGCTCCTTTCATGCTCAACTTGGATTGTGATCATTATGTTAACAATAGTAAGGCTGCAAGAGAAGCCATGTGTTTCTTGATGGACCCTCAAATTGGAAGGAAAGTTTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGAAATTATCGTTATGCCAACAGGAACGCAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTCCGGTGTATGTGGGCACTGGAATAGTTTTCAGAAGGCAAGCTTTGTATGGATATAATCCTCCAAGGGGTCCTAAGCGCCCAAAGATGGTAAGCTGTGACTGCTGCCCATGTTTTGGACGCCGCACGAAGCTTCCAAAGTATTCCAAGAATGATGCAAATGGAGATGGTGCAAACCTCCAAGTGCAAACCTCCAAAGAATGGATGATGACAAAGAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

255

Amino Acids

28.99

Weight (kDa)

9.1

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	10 - 234	1.3e-119	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	2 cut(s)	659, 744
AccII	CGCG	1 cut(s)	306
AciI	CCGC	2 cut(s)	304, 667
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	664
AfiI	CCNNNNNNNGG	6 cut(s)	104, 419, 611, 631, 659, 744
AgsI	TTSAA	2 cut(s)	55, 542
AjnI	CCWGG	2 cut(s)	160, 256
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	5 cut(s)	220, 587, 639, 676, 762
AluI	AGCT	5 cut(s)	220, 587, 639, 676, 762
Alw21I	GWGCWC	2 cut(s)	222, 321
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	4 cut(s)	78, 134, 196, 254
ApeKI	GCWGC	2 cut(s)	380, 648
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	73, 624
AspS9I	GGNCC	6 cut(s)	135, 154, 301, 409, 545, 614
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	5 cut(s)	154, 301, 409, 545, 614
BaeGI	GKGCMC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	222, 321
BbvI	GCAGC	2 cut(s)	367, 635
BccI	CCATC	6 cut(s)	116, 400, 455, 527, 625, 704
BciT130I	CCWGG	2 cut(s)	162, 258
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	625
BisI	GCNGC	3 cut(s)	381, 649, 667
BlsI	GCNGC	3 cut(s)	382, 650, 668
Bme1390I	CCNGG	2 cut(s)	162, 258
Bme18I	GGWCC	5 cut(s)	154, 301, 409, 545, 614
BmgT120I	GGNCC	6 cut(s)	135, 154, 301, 409, 545, 614
BmiI	GGNNCC	5 cut(s)	96, 156, 286, 411, 615
BmrFI	CCNGG	2 cut(s)	162, 258
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	496
BpmI	CTGGAG	2 cut(s)	84, 333
Bpu10I	CCTNAGC	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	664
BsaJI	CCNNGG	4 cut(s)	131, 160, 297, 608
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 419, 611, 631, 659, 744
Bse1I	ACTGG	2 cut(s)	442, 568
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	162, 258
BseDI	CCNNGG	4 cut(s)	131, 160, 297, 608
BseGI	GGATG	2 cut(s)	538, 753
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	6 cut(s)	104, 419, 611, 631, 659, 744
BseNI	ACTGG	2 cut(s)	442, 568
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	367, 635
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	80, 136, 198, 256
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	2 cut(s)	222, 321
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	6 cut(s)	104, 419, 611, 631, 659, 744
BsmAI	GTCTC	1 cut(s)	313
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	80, 136, 198, 256
Bsp1286I	GDGCHC	3 cut(s)	222, 321, 563
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	2 cut(s)	304, 667
BspANI	GGCC	4 cut(s)	80, 136, 198, 256
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	5 cut(s)	96, 156, 286, 411, 615
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	442, 568
BssECI	CCNNGG	4 cut(s)	131, 160, 297, 608
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	1 cut(s)	664
BssT1I	CCWWGG	3 cut(s)	131, 297, 608
Bst2UI	CCWGG	2 cut(s)	162, 258
Bst6I	CTCTTC	2 cut(s)	42, 245
BstACI	GRCGYC	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	150, 618
BstDSI	CCRYGG	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	538, 753
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	2 cut(s)	73, 624
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 293, 389, 645
BstNI	CCWGG	2 cut(s)	162, 258
BstSCI	CCNGG	2 cut(s)	160, 256
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	367, 635
BstV2I	GAAGAC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	80, 136, 198, 256
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	538, 753
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	2 cut(s)	73, 624
Cfr13I	GGNCC	6 cut(s)	135, 154, 301, 409, 545, 614
CseI	GACGC	2 cut(s)	295, 672
CviAII	CATG	6 cut(s)	132, 289, 337, 394, 520, 654
DdeI	CTNAG	2 cut(s)	150, 618
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	42, 245
EarI	CTCTTC	2 cut(s)	42, 245
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	131, 297, 608
Eco147I	AGGCCT	2 cut(s)	198, 256
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	5 cut(s)	154, 301, 409, 545, 614
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoO109I	RGGNCCY	2 cut(s)	154, 614
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	160, 256
EcoT14I	CCWWGG	3 cut(s)	131, 297, 608
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	131, 297, 608
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	6 cut(s)	135, 292, 340, 397, 523, 657
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	131, 288, 336, 393, 519, 653
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	381, 649, 667
FokI	GGATG	2 cut(s)	545, 760
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	381, 649, 667
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	2 cut(s)	72, 623
GluI	GCNGC	3 cut(s)	381, 649, 667
GsuI	CTGGAG	2 cut(s)	84, 333
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	4 cut(s)	80, 136, 198, 256
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	2 cut(s)	295, 672
HhaI	GCGC	2 cut(s)	73, 624
Hin1I	GRCGYC	1 cut(s)	664
Hin1II	CATG	6 cut(s)	135, 292, 340, 397, 523, 657
Hin6I	GCGC	2 cut(s)	71, 622
HinP1I	GCGC	2 cut(s)	71, 622
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	585, 674
HinfI	GANTC	1 cut(s)	169
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	578
Hpy188III	TCNNGA	4 cut(s)	101, 312, 403, 530
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	5 cut(s)	98, 203, 271, 417, 573
HpyCH4V	TGCA	5 cut(s)	118, 383, 701, 716, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 293, 389, 645
HpyF3I	CTNAG	2 cut(s)	150, 618
Hsp92I	GRCGYC	1 cut(s)	664
Hsp92II	CATG	6 cut(s)	135, 292, 340, 397, 523, 657
HspAI	GCGC	2 cut(s)	71, 622
Ksp22I	TGATCA	1 cut(s)	355
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	225, 334
Lsp1109I	GCAGC	2 cut(s)	367, 635
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	59, 262, 496
MhlI	GDGCHC	3 cut(s)	222, 321, 563
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	4 cut(s)	11, 417, 475, 537
MluNI	TGGCCA	1 cut(s)	80
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	2 cut(s)	366, 516
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	162, 258
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	2 cut(s)	162, 258
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	77, 293, 389, 645
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	6 cut(s)	135, 292, 340, 397, 523, 657
NlaIV	GGNNCC	5 cut(s)	96, 156, 286, 411, 615
NmuCI	GTSAC	1 cut(s)	641
PceI	AGGCCT	2 cut(s)	198, 256
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	2 cut(s)	659, 744
PkrI	GCNGC	3 cut(s)	382, 650, 668
PpuMI	RGGWCCY	2 cut(s)	154, 614
Psp124BI	GAGCTC	1 cut(s)	222
Psp5II	RGGWCCY	2 cut(s)	154, 614
Psp6I	CCWGG	2 cut(s)	160, 256
PspGI	CCWGG	2 cut(s)	160, 256
PspN4I	GGNNCC	5 cut(s)	96, 156, 286, 411, 615
PspPI	GGNCC	6 cut(s)	135, 154, 301, 409, 545, 614
PspPPI	RGGWCCY	2 cut(s)	154, 614
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	366, 516
SatI	GCNGC	3 cut(s)	381, 649, 667
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	6 cut(s)	135, 154, 301, 409, 545, 614
ScrFI	CCNGG	2 cut(s)	162, 258
SduI	GDGCHC	3 cut(s)	222, 321, 563
SfaNI	GCATC	1 cut(s)	688
SinI	GGWCC	5 cut(s)	154, 301, 409, 545, 614
Sse9I	AATT	4 cut(s)	11, 417, 475, 537
SseBI	AGGCCT	2 cut(s)	198, 256
SsiI	CCGC	2 cut(s)	304, 667
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	2 cut(s)	198, 256
StyD4I	CCNGG	2 cut(s)	160, 256
StyI	CCWWGG	3 cut(s)	131, 297, 608
TasI	AATT	4 cut(s)	11, 417, 475, 537
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	366, 516
Tru9I	TTAA	2 cut(s)	366, 516
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	2 cut(s)	380, 648
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	60, 305, 325, 536
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	2 cut(s)	659, 744
VpaK11BI	GGWCC	5 cut(s)	154, 301, 409, 545, 614
XagI	CCTNNNNNAGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.