Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Reverse (-)

375493 .. 376635

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcttgtgctaattggcctcattgatatgatgagagaatatgaagagttcaaggttaggataaatgcgcttgtggccaaagccacagaggttcctccagaagggtggattatgcaagatgggacaccatggcccggaaacaatactaaggaccaccctggtatgattcaggtctttcttggtcacagtggaggccttgatactgaaagaaatgagctccctcgtcttgtctatgtgtctcatgagaagaggcctggcttttcacatcataagaaggctagtgccatgaatgccttggtccgcgtctctggagtgctcaccaatgctcctttcatgctcaacttggattgtgatcattatgttaacaatagtaaggctgcaagagaagccatgtgtttcttgatggaccctcaaattggaaggaaagtttgctatgtccagtttcctcaaagatttgacggcattgatagaaattatcgttatgccaacaggaacacaattaacatgaaaggtctggatggaattcaaggtccggtgtatgtgggcacaagatgtgttttcagaaggaaagctttgtatggatataatcctccaaggggtcctaagcacccaaagatggtaagctgtgaatgctgcccatgttttggacgccgcacgaagcttccaaagtattccaagaatgatgcaaatggagatggtgcaaacctccaagtacaagtaggaatggatgatgacaaagagctattgataaatctctccttcctcaagccatgctgccatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

261

Amino Acids

29.47

Weight (kDa)

9.05

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	301, 652
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	649
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	6 cut(s)	101, 134, 416, 596, 616, 644
AgsI	TTSAA	2 cut(s)	52, 527
AjnI	CCWGG	2 cut(s)	157, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	5 cut(s)	217, 572, 624, 661, 742
AluI	AGCT	5 cut(s)	217, 572, 624, 661, 742
Alw21I	GWGCWC	2 cut(s)	219, 318
Alw26I	GTCTC	2 cut(s)	243, 310
AoxI	GGCC	5 cut(s)	16, 75, 131, 193, 251
ApeKI	GCWGC	3 cut(s)	377, 633, 774
ApoI	RAATTY	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	6 cut(s)	132, 151, 298, 406, 530, 599
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	5 cut(s)	151, 298, 406, 530, 599
BaeGI	GKGCMC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	219, 318
BbvI	GCAGC	3 cut(s)	364, 620, 761
BccI	CCATC	5 cut(s)	113, 397, 512, 610, 689
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	159, 255
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	243, 310
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	4 cut(s)	378, 634, 652, 775
BlsI	GCNGC	4 cut(s)	379, 635, 653, 776
Bme1390I	CCNGG	3 cut(s)	135, 159, 255
Bme18I	GGWCC	5 cut(s)	151, 298, 406, 530, 599
BmgT120I	GGNCC	6 cut(s)	132, 151, 298, 406, 530, 599
BmiI	GGNNCC	3 cut(s)	93, 408, 600
BmrFI	CCNGG	3 cut(s)	135, 159, 255
BmsI	GCATC	1 cut(s)	673
BpmI	CTGGAG	2 cut(s)	81, 330
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	649
BsaJI	CCNNGG	4 cut(s)	128, 157, 294, 593
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 134, 416, 596, 616, 644
Bse1I	ACTGG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	159, 255
BseDI	CCNNGG	4 cut(s)	128, 157, 294, 593
BseGI	GGATG	2 cut(s)	523, 733
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	6 cut(s)	101, 134, 416, 596, 616, 644
BseNI	ACTGG	1 cut(s)	439
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	364, 620, 761
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	18, 77, 133, 195, 253
BsiHKAI	GWGCWC	2 cut(s)	219, 318
BsiSI	CCGG	2 cut(s)	135, 533
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	6 cut(s)	101, 134, 416, 596, 616, 644
BsmAI	GTCTC	2 cut(s)	243, 310
BsmBI	CGTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	2 cut(s)	295, 635
BsnI	GGCC	5 cut(s)	18, 77, 133, 195, 253
Bsp1286I	GDGCHC	3 cut(s)	219, 318, 548
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	2 cut(s)	301, 652
BspANI	GGCC	5 cut(s)	18, 77, 133, 195, 253
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	93, 408, 600
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	4 cut(s)	128, 157, 294, 593
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	649
BssT1I	CCWWGG	3 cut(s)	128, 294, 593
Bst2UI	CCWGG	2 cut(s)	159, 255
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	2 cut(s)	39, 242
BstACI	GRCGYC	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	147, 603
BstDSI	CCRYGG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	523, 733
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	243, 310
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 290, 386, 630
BstNI	CCWGG	2 cut(s)	159, 255
BstSCI	CCNGG	3 cut(s)	133, 157, 253
BstSLI	GKGCMC	1 cut(s)	548
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	364, 620, 761
BstXI	CCANNNNNNTGG	1 cut(s)	105
BsuRI	GGCC	5 cut(s)	18, 77, 133, 195, 253
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	523, 733
BtsIMutI	CAGTG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	6 cut(s)	132, 151, 298, 406, 530, 599
CseI	GACGC	2 cut(s)	292, 657
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	9 cut(s)	129, 242, 286, 334, 391, 505, 639, 771, 779
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	2 cut(s)	147, 603
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	39, 242
EarI	CTCTTC	2 cut(s)	39, 242
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	3 cut(s)	128, 294, 593
Eco147I	AGGCCT	2 cut(s)	195, 253
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	5 cut(s)	151, 298, 406, 530, 599
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	157, 253
EcoT14I	CCWWGG	3 cut(s)	128, 294, 593
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	3 cut(s)	128, 294, 593
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	9 cut(s)	132, 245, 289, 337, 394, 508, 642, 774, 782
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	9 cut(s)	128, 241, 285, 333, 390, 504, 638, 770, 778
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	378, 634, 652, 775
FokI	GGATG	2 cut(s)	530, 740
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	378, 634, 652, 775
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	4 cut(s)	378, 634, 652, 775
GsuI	CTGGAG	2 cut(s)	81, 330
HaeIII	GGCC	5 cut(s)	18, 77, 133, 195, 253
HapII	CCGG	2 cut(s)	135, 533
HgaI	GACGC	2 cut(s)	292, 657
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	649
Hin1II	CATG	9 cut(s)	132, 245, 289, 337, 394, 508, 642, 774, 782
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	570, 659
HinfI	GANTC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	135, 533
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	5 cut(s)	98, 242, 309, 400, 515
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	5 cut(s)	95, 268, 414, 558, 769
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	115, 380, 686, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 290, 386, 630
HpyF3I	CTNAG	2 cut(s)	147, 603
Hsp92I	GRCGYC	1 cut(s)	649
Hsp92II	CATG	9 cut(s)	132, 245, 289, 337, 394, 508, 642, 774, 782
HspAI	GCGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	222, 331
Lsp1109I	GCAGC	3 cut(s)	364, 620, 761
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	56, 259
MhlI	GDGCHC	3 cut(s)	219, 318, 548
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	5 cut(s)	12, 414, 472, 498, 522
MluNI	TGGCCA	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	3 cut(s)	363, 501, 784
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	2 cut(s)	135, 533
MspR9I	CCNGG	3 cut(s)	135, 159, 255
Mva1269I	GAATGC	2 cut(s)	295, 635
MvaI	CCWGG	2 cut(s)	159, 255
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	74, 290, 386, 630
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	9 cut(s)	132, 245, 289, 337, 394, 508, 642, 774, 782
NlaIV	GGNNCC	3 cut(s)	93, 408, 600
NmuCI	GTSAC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	241
PceI	AGGCCT	2 cut(s)	195, 253
PctI	GAATGC	2 cut(s)	295, 635
PfeI	GAWTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	379, 635, 653, 776
PpuMI	RGGWCCY	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	157, 253
PspGI	CCWGG	2 cut(s)	157, 253
PspN4I	GGNNCC	3 cut(s)	93, 408, 600
PspPI	GGNCC	6 cut(s)	132, 151, 298, 406, 530, 599
PspPPI	RGGWCCY	1 cut(s)	599
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	363, 501, 784
SatI	GCNGC	4 cut(s)	378, 634, 652, 775
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	6 cut(s)	132, 151, 298, 406, 530, 599
ScrFI	CCNGG	3 cut(s)	135, 159, 255
SduI	GDGCHC	3 cut(s)	219, 318, 548
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	5 cut(s)	151, 298, 406, 530, 599
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	5 cut(s)	12, 414, 472, 498, 522
SseBI	AGGCCT	2 cut(s)	195, 253
SsiI	CCGC	2 cut(s)	301, 652
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	2 cut(s)	195, 253
StyD4I	CCNGG	3 cut(s)	133, 157, 253
StyI	CCWWGG	3 cut(s)	128, 294, 593
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	5 cut(s)	12, 414, 472, 498, 522
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	363, 501, 784
Tru9I	TTAA	3 cut(s)	363, 501, 784
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	377, 633, 774
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	57, 302, 322, 521
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	5 cut(s)	151, 298, 406, 530, 599
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.