Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000111.1

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Reverse (-)

146324 .. 147103

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000111.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgcaagatgggacaccattgcccggaaataatactaaggaccaccctggtatgattcaggtctttcttggtcacagtggaggccttgatactgaaggaaatgagctccctcgtcttgtctatgtgtctcgtcagaagaggcctggcttttcacatcacaagaaggctggtgccatgaatgccttggtccgcgtctctaaagtgctcaccaatgctcctttcattctcaacttggattgtgatcattatgttaacaacagtaaggctgcaagagcagccatgtgtttcttgatggatcgtcaaattggaaggaaagtttgctatgtccagtttcctcaaagatttgatggcattgatagaaatgatcatcatgccaacaggaacacagtcttctttgatattaacatgaaaggtctggatggaattcaaggttcggtttatgtgggcacaggatgtgttttcataaggcaagctttgtatggatataatcttccaaggggtcctaagcgcccaaagatggtaagctgtgactgctgcccatgttttggatgccgcaagaagcttccaaagtattccaagaatgatgcaaatggagatggtgcaaacctccaagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

9.43

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	190, 553
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	23, 517, 545
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	46, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	106, 473, 525, 562
AluI	AGCT	4 cut(s)	106, 473, 525, 562
Alw21I	GWGCWC	2 cut(s)	108, 207
Alw26I	GTCTC	2 cut(s)	132, 199
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	82, 140
ApeKI	GCWGC	3 cut(s)	266, 275, 534
ApoI	RAATTY	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	40, 187, 500
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	3 cut(s)	40, 187, 500
BaeGI	GKGCMC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	108, 207
BbvI	GCAGC	3 cut(s)	253, 287, 521
BccI	CCATC	6 cut(s)	2, 286, 341, 413, 511, 590
BciT130I	CCWGG	2 cut(s)	48, 144
BclI	TGATCA	2 cut(s)	241, 364
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	132, 199
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	4 cut(s)	267, 276, 535, 553
BlsI	GCNGC	4 cut(s)	268, 277, 536, 554
Bme1390I	CCNGG	3 cut(s)	24, 48, 144
Bme18I	GGWCC	3 cut(s)	40, 187, 500
BmgT120I	GGNCC	3 cut(s)	40, 187, 500
BmiI	GGNNCC	2 cut(s)	172, 501
BmrFI	CCNGG	3 cut(s)	24, 48, 144
BmsI	GCATC	2 cut(s)	539, 574
BpiI	GAAGAC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	46, 183, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 517, 545
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	48, 144
BseDI	CCNNGG	3 cut(s)	46, 183, 494
BseGI	GGATG	3 cut(s)	424, 458, 554
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	23, 517, 545
BseMI	GCAATG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	253, 287, 521
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	84, 142
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	108, 207
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	23, 517, 545
BsmAI	GTCTC	2 cut(s)	132, 199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	84, 142
Bsp1286I	GDGCHC	3 cut(s)	108, 207, 449
Bsp143I	GATC	3 cut(s)	241, 295, 364
BspACI	CCGC	2 cut(s)	190, 553
BspANI	GGCC	2 cut(s)	84, 142
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	172, 501
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	46, 183, 494
BssMI	GATC	3 cut(s)	241, 295, 364
BssT1I	CCWWGG	2 cut(s)	183, 494
Bst2UI	CCWGG	2 cut(s)	48, 144
Bst4CI	ACNGT	3 cut(s)	77, 260, 388
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	36, 504
BstF5I	GGATG	3 cut(s)	424, 458, 554
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	3 cut(s)	244, 298, 367
BstMAI	GTCTC	2 cut(s)	132, 199
BstMBI	GATC	3 cut(s)	241, 295, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 272, 275, 531
BstNI	CCWGG	2 cut(s)	48, 144
BstSCI	CCNGG	3 cut(s)	22, 46, 142
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	253, 287, 521
BstV2I	GAAGAC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	84, 142
BtsCI	GGATG	3 cut(s)	424, 458, 554
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	3 cut(s)	40, 187, 500
CseI	GACGC	1 cut(s)	181
CviAII	CATG	5 cut(s)	175, 280, 371, 406, 540
DdeI	CTNAG	2 cut(s)	36, 504
DpnI	GATC	3 cut(s)	243, 297, 366
DpnII	GATC	3 cut(s)	241, 295, 364
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	183, 494
Eco147I	AGGCCT	2 cut(s)	84, 142
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	40, 187, 500
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	46, 142
EcoT14I	CCWWGG	2 cut(s)	183, 494
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	183, 494
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	5 cut(s)	178, 283, 374, 409, 543
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	5 cut(s)	174, 279, 370, 405, 539
FbaI	TGATCA	2 cut(s)	241, 364
Fnu4HI	GCNGC	4 cut(s)	267, 276, 535, 553
FokI	GGATG	3 cut(s)	431, 465, 561
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	4 cut(s)	267, 276, 535, 553
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	267, 276, 535, 553
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	84, 142
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	178, 283, 374, 409, 543
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	471, 560
HinfI	GANTC	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	289, 416
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	89, 157, 303
HpyCH4III	ACNGT	3 cut(s)	77, 260, 388
HpyCH4V	TGCA	4 cut(s)	4, 269, 587, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 272, 275, 531
HpyF3I	CTNAG	2 cut(s)	36, 504
Hsp92II	CATG	5 cut(s)	178, 283, 374, 409, 543
HspAI	GCGC	1 cut(s)	508
Ksp22I	TGATCA	2 cut(s)	241, 364
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	241, 295, 364
LmnI	GCTCC	2 cut(s)	111, 220
Lsp1109I	GCAGC	3 cut(s)	253, 287, 521
LweI	GCATC	2 cut(s)	539, 574
MaeIII	GTNAC	2 cut(s)	71, 527
MalI	GATC	3 cut(s)	243, 297, 366
MboI	GATC	3 cut(s)	241, 295, 364
MboII	GAAGA	3 cut(s)	148, 382, 482
MhlI	GDGCHC	3 cut(s)	108, 207, 449
MluCI	AATT	2 cut(s)	303, 423
MnlI	CCTC	5 cut(s)	74, 120, 132, 345, 617
MseI	TTAA	2 cut(s)	252, 402
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	3 cut(s)	24, 48, 144
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	48, 144
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	179, 272, 275, 531
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	241, 295, 364
NlaIII	CATG	5 cut(s)	178, 283, 374, 409, 543
NlaIV	GGNNCC	2 cut(s)	172, 501
NmuCI	GTSAC	2 cut(s)	71, 527
PceI	AGGCCT	2 cut(s)	84, 142
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	268, 277, 536, 554
PpuMI	RGGWCCY	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	46, 142
PspGI	CCWGG	2 cut(s)	46, 142
PspN4I	GGNNCC	2 cut(s)	172, 501
PspPI	GGNCC	3 cut(s)	40, 187, 500
PspPPI	RGGWCCY	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	252, 402
SatI	GCNGC	4 cut(s)	267, 276, 535, 553
Sau3AI	GATC	3 cut(s)	241, 295, 364
Sau96I	GGNCC	3 cut(s)	40, 187, 500
ScrFI	CCNGG	3 cut(s)	24, 48, 144
SduI	GDGCHC	3 cut(s)	108, 207, 449
SetI	ASST	8 cut(s)	63, 108, 415, 433, 475, 527, 564, 609
SfaNI	GCATC	2 cut(s)	539, 574
SinI	GGWCC	3 cut(s)	40, 187, 500
Sse9I	AATT	2 cut(s)	303, 423
SseBI	AGGCCT	2 cut(s)	84, 142
SsiI	CCGC	2 cut(s)	190, 553
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	2 cut(s)	84, 142
StyD4I	CCNGG	3 cut(s)	22, 46, 142
StyI	CCWWGG	2 cut(s)	183, 494
TaaI	ACNGT	3 cut(s)	77, 260, 388
TasI	AATT	2 cut(s)	303, 423
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	252, 402
Tru9I	TTAA	2 cut(s)	252, 402
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	71, 527
TseI	GCWGC	3 cut(s)	266, 275, 534
Tsp45I	GTSAC	2 cut(s)	71, 527
TspDTI	ATGAA	4 cut(s)	191, 211, 422, 451
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	40, 187, 500
XapI	RAATTY	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.