Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Forward (+)

55902582 .. 55903945

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG394100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTTCTGTACTCAAACAGAGTAGTTCTGCTTCTACTGCTAAAGAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAGAGGTTCCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATGGCCCGGAAACAATACTAAGGACCACCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGCCTTGATACTGAAAGAAATGAGCTCCCTCGTCTTGTCTATGTGTCTCATGAGAAGAGGCCTGGCTTTTCACATCATAAGAAGGCTAGTGCCATGAATGCCTTGGTCCGCGTCTCTGGAGTGCTCACCAATGCTCCTTTCATGCTCAACTTGGATTGTGATCATTATGTTAACAATAGTAAGGCTGCAAGAGAAGCCATGTGTTTCTTGATGGACCCTCAAATTGGAAGGAAAGTTTGCTATGTCCAGTTTCCTCAAAGATTTGACGGCATTGATAGAAATTATCGTTATGCCAACAGGAACACAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTCCGGTGTATGTGGGCACAAGATGTGTTTTCAGAAGGAAAGCTTTGTATGGATATAATCCTCCAAGGGGTCCTAAGCACCCAAAGATGGTAAGCTGTGAATGCTGCCCATGTTTTGGACGCCGCACGAAGCTTCCAAAGTATTCCAAGAATGATGCAAATGGAGATGGTGCAAACCTCCAAGTACAAGGAATGGATGATGACAAAGAGCTATTGATAAATCTCTCCTTCCTCAAGCCCTGCTGCCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

268

Amino Acids

30.4

Weight (kDa)

9.19

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	14 - 251	2.8e-121	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	313, 676
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	673
AfaI	GTAC	2 cut(s)	11, 738
AfiI	CCNNNNNNNGG	6 cut(s)	113, 146, 428, 620, 640, 668
AgsI	TTSAA	2 cut(s)	64, 551
AjnI	CCWGG	2 cut(s)	169, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	5 cut(s)	229, 596, 648, 685, 763
AluI	AGCT	5 cut(s)	229, 596, 648, 685, 763
Alw21I	GWGCWC	2 cut(s)	231, 330
Alw26I	GTCTC	2 cut(s)	255, 322
AoxI	GGCC	4 cut(s)	87, 143, 205, 263
ApeKI	GCWGC	3 cut(s)	389, 657, 795
ApoI	RAATTY	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	6 cut(s)	144, 163, 310, 418, 554, 623
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	5 cut(s)	163, 310, 418, 554, 623
BaeGI	GKGCMC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	231, 330
BbvI	GCAGC	3 cut(s)	376, 644, 782
BccI	CCATC	5 cut(s)	125, 409, 536, 634, 713
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	2 cut(s)	171, 267
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	255, 322
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	4 cut(s)	390, 658, 676, 796
BlsI	GCNGC	4 cut(s)	391, 659, 677, 797
Bme1390I	CCNGG	3 cut(s)	147, 171, 267
Bme18I	GGWCC	5 cut(s)	163, 310, 418, 554, 623
BmgT120I	GGNCC	6 cut(s)	144, 163, 310, 418, 554, 623
BmiI	GGNNCC	3 cut(s)	105, 420, 624
BmrFI	CCNGG	3 cut(s)	147, 171, 267
BmsI	GCATC	1 cut(s)	697
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	93, 342
Bpu10I	CCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	4 cut(s)	140, 169, 306, 617
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 146, 428, 620, 640, 668
Bse1I	ACTGG	1 cut(s)	451
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	171, 267
BseDI	CCNNGG	4 cut(s)	140, 169, 306, 617
BseGI	GGATG	2 cut(s)	547, 754
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	6 cut(s)	113, 146, 428, 620, 640, 668
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	376, 644, 782
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	89, 145, 207, 265
BsiHKAI	GWGCWC	2 cut(s)	231, 330
BsiSI	CCGG	2 cut(s)	147, 557
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	6 cut(s)	113, 146, 428, 620, 640, 668
BsmAI	GTCTC	2 cut(s)	255, 322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	2 cut(s)	307, 659
BsnI	GGCC	4 cut(s)	89, 145, 207, 265
Bsp1286I	GDGCHC	3 cut(s)	231, 330, 572
Bsp143I	GATC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	313, 676
BspANI	GGCC	4 cut(s)	89, 145, 207, 265
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	105, 420, 624
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	4 cut(s)	140, 169, 306, 617
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	673
BssT1I	CCWWGG	3 cut(s)	140, 306, 617
Bst2UI	CCWGG	2 cut(s)	171, 267
Bst4CI	ACNGT	2 cut(s)	200, 511
Bst6I	CTCTTC	2 cut(s)	51, 254
BstACI	GRCGYC	1 cut(s)	673
BstDEI	CTNAG	2 cut(s)	159, 627
BstDSI	CCRYGG	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	547, 754
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	255, 322
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 86, 302, 398, 654
BstNI	CCWGG	2 cut(s)	171, 267
BstSCI	CCNGG	3 cut(s)	145, 169, 265
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	376, 644, 782
BstV2I	GAAGAC	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	89, 145, 207, 265
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	547, 754
BtsIMutI	CAGTG	1 cut(s)	205
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	144, 163, 310, 418, 554, 623
CseI	GACGC	2 cut(s)	304, 681
Csp6I	GTAC	2 cut(s)	10, 737
CviAII	CATG	8 cut(s)	141, 254, 298, 346, 403, 529, 663, 800
CviQI	GTAC	2 cut(s)	10, 737
DdeI	CTNAG	2 cut(s)	159, 627
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	51, 254
EarI	CTCTTC	2 cut(s)	51, 254
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	3 cut(s)	140, 306, 617
Eco147I	AGGCCT	2 cut(s)	207, 265
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	5 cut(s)	163, 310, 418, 554, 623
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	169, 265
EcoT14I	CCWWGG	3 cut(s)	140, 306, 617
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	3 cut(s)	140, 306, 617
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	8 cut(s)	144, 257, 301, 349, 406, 532, 666, 803
FalI	AAGNNNNNCTT	2 cut(s)	580, 612
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	8 cut(s)	140, 253, 297, 345, 402, 528, 662, 799
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	390, 658, 676, 796
FokI	GGATG	2 cut(s)	554, 761
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	390, 658, 676, 796
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	390, 658, 676, 796
GsuI	CTGGAG	2 cut(s)	93, 342
HaeIII	GGCC	4 cut(s)	89, 145, 207, 265
HapII	CCGG	2 cut(s)	147, 557
HgaI	GACGC	2 cut(s)	304, 681
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	673
Hin1II	CATG	8 cut(s)	144, 257, 301, 349, 406, 532, 666, 803
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	594, 683
HinfI	GANTC	1 cut(s)	178
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	2 cut(s)	147, 557
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	587
Hpy188III	TCNNGA	5 cut(s)	110, 254, 321, 412, 539
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	5 cut(s)	107, 280, 426, 582, 790
HpyCH4III	ACNGT	2 cut(s)	200, 511
HpyCH4V	TGCA	4 cut(s)	127, 392, 710, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 86, 302, 398, 654
HpyF3I	CTNAG	2 cut(s)	159, 627
Hsp92I	GRCGYC	1 cut(s)	673
Hsp92II	CATG	8 cut(s)	144, 257, 301, 349, 406, 532, 666, 803
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	234, 343
Lsp1109I	GCAGC	3 cut(s)	376, 644, 782
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	68, 271, 505
MhlI	GDGCHC	3 cut(s)	231, 330, 572
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	426, 484, 546
MluNI	TGGCCA	1 cut(s)	89
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	3 cut(s)	375, 525, 805
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	2 cut(s)	147, 557
MspR9I	CCNGG	3 cut(s)	147, 171, 267
Mva1269I	GAATGC	2 cut(s)	307, 659
MvaI	CCWGG	2 cut(s)	171, 267
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	5 cut(s)	37, 86, 302, 398, 654
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	8 cut(s)	144, 257, 301, 349, 406, 532, 666, 803
NlaIV	GGNNCC	3 cut(s)	105, 420, 624
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	253
PceI	AGGCCT	2 cut(s)	207, 265
PctI	GAATGC	2 cut(s)	307, 659
PfeI	GAWTC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	4 cut(s)	391, 659, 677, 797
PpuMI	RGGWCCY	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	169, 265
PspGI	CCWGG	2 cut(s)	169, 265
PspN4I	GGNNCC	3 cut(s)	105, 420, 624
PspPI	GGNCC	6 cut(s)	144, 163, 310, 418, 554, 623
PspPPI	RGGWCCY	1 cut(s)	623
RsaI	GTAC	2 cut(s)	11, 738
RsaNI	GTAC	2 cut(s)	10, 737
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	375, 525, 805
SatI	GCNGC	4 cut(s)	390, 658, 676, 796
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	6 cut(s)	144, 163, 310, 418, 554, 623
ScrFI	CCNGG	3 cut(s)	147, 171, 267
SduI	GDGCHC	3 cut(s)	231, 330, 572
SfaNI	GCATC	1 cut(s)	697
SinI	GGWCC	5 cut(s)	163, 310, 418, 554, 623
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	3 cut(s)	426, 484, 546
SseBI	AGGCCT	2 cut(s)	207, 265
SsiI	CCGC	2 cut(s)	313, 676
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	2 cut(s)	207, 265
StyD4I	CCNGG	3 cut(s)	145, 169, 265
StyI	CCWWGG	3 cut(s)	140, 306, 617
TaaI	ACNGT	2 cut(s)	200, 511
TasI	AATT	3 cut(s)	426, 484, 546
TatI	WGTACW	2 cut(s)	9, 736
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	375, 525, 805
Tru9I	TTAA	3 cut(s)	375, 525, 805
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	389, 657, 795
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	69, 314, 334, 545
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	5 cut(s)	163, 310, 418, 554, 623
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.