Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004962.1

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Reverse (-)

41157 .. 42178

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004962.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ctgttaaagagagaatatgaagagttcaaggttaggataaatgtgcttgtggccaaagccacaaaggttcctccagaagggtggattatgcaagatgggacaccattgcccggaaataatactaaggaccaccctggtatgattcaggtctttcttggtcacagtggaggccttgatactgaaggaaatgagctccctcgtcttgtttatgtgtctcgtgagaagaggccaggcttttcacatcacaagaaggctggtgccatgaatgccttggtccgcgtctctaaagtgctcaccaatgctcctttcattctcaacttggattgtgatcattatgttaacaacagtaaggctgcaagagcagccatgtgtttcttgatggatcgtcaaattggaaggaaagtttgctatgtccagtttcctcaaagatttgatggcattgatagaaatgatcatcatgccaacaggaacacagtcttctttgatattaacatgaaaggtctggatggaattcaaggttcggtttatgtgggcacaggatgtgttttcataaggcaagctttgtatggatataatcttccaaggggtcctaagcgcccaaagatggtaagctgtgactgctgcccatgttttggatgccgcaagaagcttccaaagtattccaagaatgatgcaaatggagatggtgcaaacctccaagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

9.42

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	277, 640
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	77, 110, 604, 632
AgsI	TTSAA	2 cut(s)	28, 515
AjnI	CCWGG	2 cut(s)	133, 229
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	4 cut(s)	193, 560, 612, 649
AluI	AGCT	4 cut(s)	193, 560, 612, 649
Alw21I	GWGCWC	2 cut(s)	195, 294
Alw26I	GTCTC	2 cut(s)	219, 286
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	3 cut(s)	51, 169, 227
ApeKI	GCWGC	3 cut(s)	353, 362, 621
ApoI	RAATTY	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	3 cut(s)	127, 274, 587
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	3 cut(s)	127, 274, 587
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	195, 294
BbvI	GCAGC	3 cut(s)	340, 374, 608
BccI	CCATC	6 cut(s)	89, 373, 428, 500, 598, 677
BciT130I	CCWGG	2 cut(s)	135, 231
BclI	TGATCA	2 cut(s)	328, 451
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	219, 286
BfoI	RGCGCY	1 cut(s)	598
BisI	GCNGC	4 cut(s)	354, 363, 622, 640
BlsI	GCNGC	4 cut(s)	355, 364, 623, 641
Bme1390I	CCNGG	3 cut(s)	111, 135, 231
Bme18I	GGWCC	3 cut(s)	127, 274, 587
BmgT120I	GGNCC	3 cut(s)	127, 274, 587
BmiI	GGNNCC	3 cut(s)	69, 259, 588
BmrFI	CCNGG	3 cut(s)	111, 135, 231
BmsI	GCATC	2 cut(s)	626, 661
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	133, 270, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 110, 604, 632
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	135, 231
BseDI	CCNNGG	3 cut(s)	133, 270, 581
BseGI	GGATG	3 cut(s)	511, 545, 641
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	77, 110, 604, 632
BseMI	GCAATG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	340, 374, 608
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	53, 171, 229
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	195, 294
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	77, 110, 604, 632
BsmAI	GTCTC	2 cut(s)	219, 286
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	53, 171, 229
Bsp1286I	GDGCHC	3 cut(s)	195, 294, 536
Bsp143I	GATC	3 cut(s)	328, 382, 451
BspACI	CCGC	2 cut(s)	277, 640
BspANI	GGCC	3 cut(s)	53, 171, 229
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	69, 259, 588
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	133, 270, 581
BssMI	GATC	3 cut(s)	328, 382, 451
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	270, 581
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	135, 231
Bst4CI	ACNGT	3 cut(s)	164, 347, 475
Bst6I	CTCTTC	2 cut(s)	15, 218
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	123, 591
BstENI	CCTNNNNNAGG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	511, 545, 641
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	3 cut(s)	331, 385, 454
BstMAI	GTCTC	2 cut(s)	219, 286
BstMBI	GATC	3 cut(s)	328, 382, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 359, 362, 618
BstNI	CCWGG	2 cut(s)	135, 231
BstSCI	CCNGG	3 cut(s)	109, 133, 229
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	340, 374, 608
BstV2I	GAAGAC	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	53, 171, 229
BtsCI	GGATG	3 cut(s)	511, 545, 641
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	127, 274, 587
CseI	GACGC	1 cut(s)	268
CviAII	CATG	5 cut(s)	262, 367, 458, 493, 627
DdeI	CTNAG	2 cut(s)	123, 591
DpnI	GATC	3 cut(s)	330, 384, 453
DpnII	GATC	3 cut(s)	328, 382, 451
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	15, 218
EarI	CTCTTC	2 cut(s)	15, 218
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	270, 581
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	127, 274, 587
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	133, 229
EcoT14I	CCWWGG	2 cut(s)	270, 581
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	2 cut(s)	270, 581
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	5 cut(s)	265, 370, 461, 496, 630
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	5 cut(s)	261, 366, 457, 492, 626
FbaI	TGATCA	2 cut(s)	328, 451
Fnu4HI	GCNGC	4 cut(s)	354, 363, 622, 640
FokI	GGATG	3 cut(s)	518, 552, 648
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	354, 363, 622, 640
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	4 cut(s)	354, 363, 622, 640
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	3 cut(s)	53, 171, 229
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	265, 370, 461, 496, 630
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	2 cut(s)	558, 647
HinfI	GANTC	1 cut(s)	142
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	4 cut(s)	74, 218, 376, 503
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	4 cut(s)	71, 176, 244, 390
HpyCH4III	ACNGT	3 cut(s)	164, 347, 475
HpyCH4V	TGCA	4 cut(s)	91, 356, 674, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 359, 362, 618
HpyF3I	CTNAG	2 cut(s)	123, 591
Hsp92II	CATG	5 cut(s)	265, 370, 461, 496, 630
HspAI	GCGC	1 cut(s)	595
Ksp22I	TGATCA	2 cut(s)	328, 451
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	328, 382, 451
LmnI	GCTCC	2 cut(s)	198, 307
Lsp1109I	GCAGC	3 cut(s)	340, 374, 608
LweI	GCATC	2 cut(s)	626, 661
MaeIII	GTNAC	2 cut(s)	158, 614
MalI	GATC	3 cut(s)	330, 384, 453
MboI	GATC	3 cut(s)	328, 382, 451
MboII	GAAGA	4 cut(s)	32, 235, 469, 569
MhlI	GDGCHC	3 cut(s)	195, 294, 536
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	390, 510
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	6 cut(s)	81, 161, 207, 219, 432, 704
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	3 cut(s)	5, 339, 489
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	111, 135, 231
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	135, 231
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	266, 359, 362, 618
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	328, 382, 451
NlaIII	CATG	5 cut(s)	265, 370, 461, 496, 630
NlaIV	GGNNCC	3 cut(s)	69, 259, 588
NmuCI	GTSAC	2 cut(s)	158, 614
PceI	AGGCCT	1 cut(s)	171
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	355, 364, 623, 641
PpuMI	RGGWCCY	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	133, 229
PspGI	CCWGG	2 cut(s)	133, 229
PspN4I	GGNNCC	3 cut(s)	69, 259, 588
PspPI	GGNCC	3 cut(s)	127, 274, 587
PspPPI	RGGWCCY	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	5, 339, 489
SatI	GCNGC	4 cut(s)	354, 363, 622, 640
Sau3AI	GATC	3 cut(s)	328, 382, 451
Sau96I	GGNCC	3 cut(s)	127, 274, 587
ScrFI	CCNGG	3 cut(s)	111, 135, 231
SduI	GDGCHC	3 cut(s)	195, 294, 536
SfaNI	GCATC	2 cut(s)	626, 661
SinI	GGWCC	3 cut(s)	127, 274, 587
Sse9I	AATT	2 cut(s)	390, 510
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	277, 640
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	109, 133, 229
StyI	CCWWGG	2 cut(s)	270, 581
TaaI	ACNGT	3 cut(s)	164, 347, 475
TasI	AATT	2 cut(s)	390, 510
TauI	GCSGC	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	5, 339, 489
Tru9I	TTAA	3 cut(s)	5, 339, 489
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	158, 614
TseI	GCWGC	3 cut(s)	353, 362, 621
Tsp45I	GTSAC	2 cut(s)	158, 614
TspDTI	ATGAA	5 cut(s)	33, 278, 298, 509, 538
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	3 cut(s)	127, 274, 587
XagI	CCTNNNNNAGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.