Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Reverse (-)

48903806 .. 48904788

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAAAGGTTTCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATTGCCCGGAAATAATACTAAGGACCACCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGCCTTGATACTGAAGGAAATGAGCTCCCTCGTCTTGTCTATGTGTCTCGTGAGAAGAGGCCTGGCTTTTCACATCACAAGAAGGCTGATGCCATGAATGCCTTGGTCCGCGTCTCTAAAGTGCTCACCAATGCTCCTTTCATTCTCAACTTGGATTGTGATCATTATGTTAACAACAGTAAGGCTGCAAGAGCAGCCATGTGTTTCTTGATGGATCGTCAAATTGGAAGGAAAGTTTGCTATGTCCAATTTCCTCAAAGATTTGATGGCATTGATAGAAATGATCATCATGCCAACAGGAACACAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTTCGGTGTATGTGGGCACAGGATGTGTTTTCAGAAGGCAAGCTTTGTATGGATATAATCTTCCAAGGGGTCCTAAGCACCCAAAGATGGTAAGCTGTGACTGCTGCCCATGTTTTGGATGCCGCAAGAAGCTTCCAAAGTATTCCAAGAATGATGCAAATGGAGATGGTGCAAACCTCCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

233

Amino Acids

26.11

Weight (kDa)

9.29

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 223	5.6e-118	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccII	CGCG	1 cut(s)	276
AciI	CCGC	2 cut(s)	274, 637
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	107, 601, 629
AgsI	TTSAA	2 cut(s)	25, 512
AjnI	CCWGG	2 cut(s)	130, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	4 cut(s)	190, 557, 609, 646
AluI	AGCT	4 cut(s)	190, 557, 609, 646
Alw21I	GWGCWC	2 cut(s)	192, 291
Alw26I	GTCTC	2 cut(s)	216, 283
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	48, 166, 224
ApeKI	GCWGC	3 cut(s)	350, 359, 618
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	3 cut(s)	124, 271, 584
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	124, 271, 584
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	192, 291
BbvI	GCAGC	3 cut(s)	337, 371, 605
BccI	CCATC	6 cut(s)	86, 370, 425, 497, 595, 674
BciT130I	CCWGG	2 cut(s)	132, 228
BclI	TGATCA	2 cut(s)	325, 448
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	216, 283
BisI	GCNGC	4 cut(s)	351, 360, 619, 637
BlsI	GCNGC	4 cut(s)	352, 361, 620, 638
Bme1390I	CCNGG	3 cut(s)	108, 132, 228
Bme18I	GGWCC	3 cut(s)	124, 271, 584
BmgT120I	GGNCC	3 cut(s)	124, 271, 584
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	3 cut(s)	108, 132, 228
BmsI	GCATC	3 cut(s)	244, 623, 658
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	130, 267, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 601, 629
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	132, 228
BseDI	CCNNGG	3 cut(s)	130, 267, 578
BseGI	GGATG	3 cut(s)	508, 542, 638
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	107, 601, 629
BseMI	GCAATG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	337, 371, 605
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	50, 168, 226
BsiHKAI	GWGCWC	2 cut(s)	192, 291
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	107, 601, 629
BsmAI	GTCTC	2 cut(s)	216, 283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	50, 168, 226
Bsp1286I	GDGCHC	3 cut(s)	192, 291, 533
Bsp143I	GATC	3 cut(s)	325, 379, 448
BspACI	CCGC	2 cut(s)	274, 637
BspANI	GGCC	3 cut(s)	50, 168, 226
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	130, 267, 578
BssMI	GATC	3 cut(s)	325, 379, 448
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	267, 578
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	132, 228
Bst4CI	ACNGT	3 cut(s)	161, 344, 472
Bst6I	CTCTTC	2 cut(s)	12, 215
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	5, 120, 588
BstF5I	GGATG	3 cut(s)	508, 542, 638
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	328, 382, 451
BstMAI	GTCTC	2 cut(s)	216, 283
BstMBI	GATC	3 cut(s)	325, 379, 448
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 263, 356, 359, 615
BstNI	CCWGG	2 cut(s)	132, 228
BstSCI	CCNGG	3 cut(s)	106, 130, 226
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	337, 371, 605
BstV2I	GAAGAC	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	50, 168, 226
BtsCI	GGATG	3 cut(s)	508, 542, 638
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	124, 271, 584
CseI	GACGC	1 cut(s)	265
CviAII	CATG	5 cut(s)	259, 364, 455, 490, 624
DdeI	CTNAG	3 cut(s)	5, 120, 588
DpnI	GATC	3 cut(s)	327, 381, 450
DpnII	GATC	3 cut(s)	325, 379, 448
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	12, 215
EarI	CTCTTC	2 cut(s)	12, 215
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	267, 578
Eco147I	AGGCCT	2 cut(s)	168, 226
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	124, 271, 584
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	130, 226
EcoT14I	CCWWGG	2 cut(s)	267, 578
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	267, 578
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	5 cut(s)	262, 367, 458, 493, 627
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	5 cut(s)	258, 363, 454, 489, 623
FbaI	TGATCA	2 cut(s)	325, 448
Fnu4HI	GCNGC	4 cut(s)	351, 360, 619, 637
FokI	GGATG	3 cut(s)	515, 549, 645
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	351, 360, 619, 637
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	351, 360, 619, 637
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	50, 168, 226
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	262, 367, 458, 493, 627
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	555, 644
HinfI	GANTC	1 cut(s)	139
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	4 cut(s)	71, 215, 373, 500
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	5 cut(s)	68, 173, 241, 387, 543
HpyCH4III	ACNGT	3 cut(s)	161, 344, 472
HpyCH4V	TGCA	4 cut(s)	88, 353, 671, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 263, 356, 359, 615
HpyF3I	CTNAG	3 cut(s)	5, 120, 588
Hsp92II	CATG	5 cut(s)	262, 367, 458, 493, 627
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	2 cut(s)	325, 448
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	325, 379, 448
LmnI	GCTCC	2 cut(s)	195, 304
Lsp1109I	GCAGC	3 cut(s)	337, 371, 605
LweI	GCATC	3 cut(s)	244, 623, 658
MaeIII	GTNAC	2 cut(s)	155, 611
MalI	GATC	3 cut(s)	327, 381, 450
MboI	GATC	3 cut(s)	325, 379, 448
MboII	GAAGA	4 cut(s)	29, 232, 466, 566
MhlI	GDGCHC	3 cut(s)	192, 291, 533
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	387, 413, 507
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	5 cut(s)	158, 204, 216, 429, 701
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	336, 486
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	108, 132, 228
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	2 cut(s)	132, 228
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	5 cut(s)	47, 263, 356, 359, 615
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	325, 379, 448
NlaIII	CATG	5 cut(s)	262, 367, 458, 493, 627
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	155, 611
PceI	AGGCCT	2 cut(s)	168, 226
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	352, 361, 620, 638
PpuMI	RGGWCCY	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	130, 226
PspGI	CCWGG	2 cut(s)	130, 226
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	3 cut(s)	124, 271, 584
PspPPI	RGGWCCY	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	336, 486
SatI	GCNGC	4 cut(s)	351, 360, 619, 637
Sau3AI	GATC	3 cut(s)	325, 379, 448
Sau96I	GGNCC	3 cut(s)	124, 271, 584
ScrFI	CCNGG	3 cut(s)	108, 132, 228
SduI	GDGCHC	3 cut(s)	192, 291, 533
SfaNI	GCATC	3 cut(s)	244, 623, 658
SinI	GGWCC	3 cut(s)	124, 271, 584
Sse9I	AATT	3 cut(s)	387, 413, 507
SseBI	AGGCCT	2 cut(s)	168, 226
SsiI	CCGC	2 cut(s)	274, 637
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	2 cut(s)	168, 226
StyD4I	CCNGG	3 cut(s)	106, 130, 226
StyI	CCWWGG	2 cut(s)	267, 578
TaaI	ACNGT	3 cut(s)	161, 344, 472
TasI	AATT	3 cut(s)	387, 413, 507
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	336, 486
Tru9I	TTAA	2 cut(s)	336, 486
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	155, 611
TseI	GCWGC	3 cut(s)	350, 359, 618
Tsp45I	GTSAC	2 cut(s)	155, 611
TspDTI	ATGAA	4 cut(s)	30, 275, 295, 506
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	3 cut(s)	124, 271, 584
XapI	RAATTY	1 cut(s)	507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.