Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019341

Physical Location & Seq

Genomic Coordinates Reverse (-)

40114494 .. 40117497

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAAAGGTTCCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATGGCCCGGAAACAATACTAAGGACCACCCTGGTATGATTCAGGTCTTTCTTGGCCACAGTGGAGGCCTTGATACTGAAGGAATCGAGCTCCCTCGTCTTGTCTATGTGTCTCGTGAGAAGAGGCCTGGCTTTTCACATCACAAGAAGGCTGGTGCCATGAATGCCTTGGTCCGCGTCTCCGGAGTGCTCACCAATGCTCCTTTCATGCACAACTTGGATTGTGATCATTATGTTAACAACAGTAAGGCTGCAACAGAAGCCATGTGTTTCTTGATGGACCCTCAAATTGGAAGGAAAGTTTGCTATGTCCAGTTTCCTCAAAGATTTGAAGGCATTGATAGAAATGATCGTTATGCCAACAGGAACACAGTCTTCTTTGATATTAACACGAAAGGTCTAGATGGAATTCAAGGTTCGGTGTATGTGCGCACAGGATGTGTTTTCAGAAGGCAAGCTTTGTATGGATATAATCCTCCAAGGGGTCCTAAGCGCCCAAAGATAGTAAGCTGTGACTGCTGCCCATGTTTTGGACGCCACAGGAAGCTTCCAAAGTATTCCAAGGATGATGCAAATGGAGATGGTGCAAACCTCCAAGTACAAGGAATGGATGATGACAAAGAGCTATTGATAAATCTCTCCTTCCTCAAGCCCTGCTGCCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

255

Amino Acids

28.71

Weight (kDa)

8.87

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 238	1.5e-120	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019341)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355621 RchiOBHm_Chr2g0132401
rosa_multiflora	Rmu_sc0000894.1_g000074 Rmu_sc0004962.1_g000010 Rmu_ssc0000111.1_g000037
rosa_roxburghii	Rroxscaffold_2G00114200
rosa_samantha	Rh2BG394100
rosa_wichuraiana	Rw2G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccII	CGCG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	1 cut(s)	274
AcoI	YGGCCR	2 cut(s)	48, 154
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	5 cut(s)	74, 107, 389, 581, 629
AgsI	TTSAA	3 cut(s)	25, 431, 512
AjnI	CCWGG	2 cut(s)	130, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	190, 557, 609, 646, 724
AluI	AGCT	5 cut(s)	190, 557, 609, 646, 724
Alw21I	GWGCWC	2 cut(s)	192, 291
Alw26I	GTCTC	2 cut(s)	216, 283
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	5 cut(s)	48, 104, 154, 166, 224
ApeKI	GCWGC	3 cut(s)	350, 618, 756
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	3 cut(s)	43, 531, 594
AspS9I	GGNCC	5 cut(s)	105, 124, 271, 379, 584
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	4 cut(s)	124, 271, 379, 584
BalI	TGGCCA	2 cut(s)	50, 156
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	192, 291
BbvI	GCAGC	3 cut(s)	337, 605, 743
BccI	CCATC	4 cut(s)	86, 370, 497, 674
BciT130I	CCWGG	2 cut(s)	132, 228
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	216, 283
BfaI	CTAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	595
BisI	GCNGC	3 cut(s)	351, 619, 757
BlsI	GCNGC	3 cut(s)	352, 620, 758
Bme1390I	CCNGG	3 cut(s)	108, 132, 228
Bme18I	GGWCC	4 cut(s)	124, 271, 379, 584
BmgT120I	GGNCC	5 cut(s)	105, 124, 271, 379, 584
BmiI	GGNNCC	4 cut(s)	66, 256, 381, 585
BmrFI	CCNGG	3 cut(s)	108, 132, 228
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	5 cut(s)	101, 130, 267, 578, 660
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 107, 389, 581, 629
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	132, 228
BseDI	CCNNGG	5 cut(s)	101, 130, 267, 578, 660
BseGI	GGATG	3 cut(s)	542, 670, 715
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	5 cut(s)	74, 107, 389, 581, 629
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	337, 605, 743
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	5 cut(s)	50, 106, 156, 168, 226
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	192, 291
BsiSI	CCGG	2 cut(s)	108, 282
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	74, 107, 389, 581, 629
BsmAI	GTCTC	2 cut(s)	216, 283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	5 cut(s)	50, 106, 156, 168, 226
Bsp1286I	GDGCHC	2 cut(s)	192, 291
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	325, 448
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	5 cut(s)	50, 106, 156, 168, 226
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	66, 256, 381, 585
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	5 cut(s)	101, 130, 267, 578, 660
BssMI	GATC	2 cut(s)	325, 448
BssNI	GRCGYC	1 cut(s)	634
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	4 cut(s)	101, 267, 578, 660
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	132, 228
Bst4CI	ACNGT	3 cut(s)	161, 344, 472
Bst6I	CTCTTC	2 cut(s)	12, 215
BstACI	GRCGYC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	120, 588
BstDSI	CCRYGG	1 cut(s)	101
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	542, 670, 715
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	595
BstHHI	GCGC	3 cut(s)	43, 531, 594
BstKTI	GATC	2 cut(s)	328, 451
BstMAI	GTCTC	2 cut(s)	216, 283
BstMBI	GATC	2 cut(s)	325, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 263, 359, 615
BstNI	CCWGG	2 cut(s)	132, 228
BstSCI	CCNGG	3 cut(s)	106, 130, 226
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	337, 605, 743
BstV2I	GAAGAC	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	50, 106, 156, 168, 226
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	3 cut(s)	542, 670, 715
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	3 cut(s)	43, 531, 594
Cfr13I	GGNCC	5 cut(s)	105, 124, 271, 379, 584
CseI	GACGC	2 cut(s)	265, 642
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	6 cut(s)	102, 259, 307, 364, 624, 761
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	2 cut(s)	120, 588
DpnI	GATC	2 cut(s)	327, 450
DpnII	GATC	2 cut(s)	325, 448
EaeI	YGGCCR	2 cut(s)	48, 154
Eam1104I	CTCTTC	2 cut(s)	12, 215
EarI	CTCTTC	2 cut(s)	12, 215
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	4 cut(s)	101, 267, 578, 660
Eco147I	AGGCCT	2 cut(s)	168, 226
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	4 cut(s)	124, 271, 379, 584
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	130, 226
EcoT14I	CCWWGG	4 cut(s)	101, 267, 578, 660
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	4 cut(s)	101, 267, 578, 660
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	6 cut(s)	105, 262, 310, 367, 627, 764
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	6 cut(s)	101, 258, 306, 363, 623, 760
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	351, 619, 757
FokI	GGATG	3 cut(s)	549, 677, 722
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	351, 619, 757
FspAI	RTGCGCAY	1 cut(s)	530
FspBI	CTAG	1 cut(s)	500
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	3 cut(s)	42, 530, 593
GluI	GCNGC	3 cut(s)	351, 619, 757
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	595
HaeIII	GGCC	5 cut(s)	50, 106, 156, 168, 226
HapII	CCGG	2 cut(s)	108, 282
HgaI	GACGC	2 cut(s)	265, 642
HhaI	GCGC	3 cut(s)	43, 531, 594
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	6 cut(s)	105, 262, 310, 367, 627, 764
Hin6I	GCGC	3 cut(s)	41, 529, 592
HinP1I	GCGC	3 cut(s)	41, 529, 592
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	555, 644
HinfI	GANTC	2 cut(s)	139, 183
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	108, 282
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	5 cut(s)	71, 215, 282, 373, 500
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	7 cut(s)	68, 173, 241, 387, 425, 543, 751
HpyCH4III	ACNGT	3 cut(s)	161, 344, 472
HpyCH4V	TGCA	5 cut(s)	88, 310, 353, 671, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 263, 359, 615
HpyF3I	CTNAG	2 cut(s)	120, 588
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	6 cut(s)	105, 262, 310, 367, 627, 764
HspAI	GCGC	3 cut(s)	41, 529, 592
Kpn2I	TCCGGA	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	325
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	325, 448
LmnI	GCTCC	2 cut(s)	195, 304
Lsp1109I	GCAGC	3 cut(s)	337, 605, 743
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	2 cut(s)	327, 450
MboI	GATC	2 cut(s)	325, 448
MboII	GAAGA	3 cut(s)	29, 232, 466
MhlI	GDGCHC	2 cut(s)	192, 291
MlsI	TGGCCA	2 cut(s)	50, 156
MluCI	AATT	2 cut(s)	387, 507
MluNI	TGGCCA	2 cut(s)	50, 156
MnlI	CCTC	9 cut(s)	78, 158, 204, 216, 393, 429, 585, 701, 755
Mox20I	TGGCCA	2 cut(s)	50, 156
MroI	TCCGGA	1 cut(s)	281
MscI	TGGCCA	2 cut(s)	50, 156
MseI	TTAA	3 cut(s)	336, 486, 766
Msp20I	TGGCCA	2 cut(s)	50, 156
MspI	CCGG	2 cut(s)	108, 282
MspR9I	CCNGG	3 cut(s)	108, 132, 228
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	2 cut(s)	132, 228
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	47, 263, 359, 615
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	325, 448
NlaIII	CATG	6 cut(s)	105, 262, 310, 367, 627, 764
NlaIV	GGNNCC	4 cut(s)	66, 256, 381, 585
NmuCI	GTSAC	1 cut(s)	611
NsbI	TGCGCA	1 cut(s)	530
PceI	AGGCCT	2 cut(s)	168, 226
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	139, 183
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	352, 620, 758
PpuMI	RGGWCCY	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	130, 226
PspGI	CCWGG	2 cut(s)	130, 226
PspN4I	GGNNCC	4 cut(s)	66, 256, 381, 585
PspPI	GGNCC	5 cut(s)	105, 124, 271, 379, 584
PspPPI	RGGWCCY	1 cut(s)	584
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	336, 486, 766
SatI	GCNGC	3 cut(s)	351, 619, 757
Sau3AI	GATC	2 cut(s)	325, 448
Sau96I	GGNCC	5 cut(s)	105, 124, 271, 379, 584
ScrFI	CCNGG	3 cut(s)	108, 132, 228
SduI	GDGCHC	2 cut(s)	192, 291
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	4 cut(s)	124, 271, 379, 584
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	2 cut(s)	387, 507
SseBI	AGGCCT	2 cut(s)	168, 226
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	2 cut(s)	168, 226
StyD4I	CCNGG	3 cut(s)	106, 130, 226
StyI	CCWWGG	4 cut(s)	101, 267, 578, 660
TaaI	ACNGT	3 cut(s)	161, 344, 472
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	387, 507
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	139, 183
Tru1I	TTAA	3 cut(s)	336, 486, 766
Tru9I	TTAA	3 cut(s)	336, 486, 766
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	3 cut(s)	350, 618, 756
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	30, 275, 295
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	4 cut(s)	124, 271, 379, 584
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.