Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019344

Physical Location & Seq

Genomic Coordinates Forward (+)

53577015 .. 53578219

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGATGGACAGAGGAACTTATATCATCGTAAAGGAAGATATGAAGTTCTTCCCAAGTGAGGATCAGCTCATCAAATTTTTGAAGATGAAGATTGATGGCAGATACTCTGGGTTCATATCCGAAATCAACTTATACAAGCATGAGCCATGGGATTTGCCCGAGAATAGCAGAAAGTACAAGACAAGCGATCGAAGCAACAGACAAACAGAGAAGGGTTATTGGCATGAAACTTCCAAGGAAGTACCAGTGGTCAATACTAATGACAAGTCTAAAGTCATTGGCAGAAAACGATTTCTAGTATTCTACAAAGGTCGTGCTTCTCGTAAAGAAAAGACTAACTGGGTTATGCAGGAGTATTTTGTTCCTGAGGGTGAGCACGAGGTAGTATATCATACTTATATATTGTATGAGTTTTGGAATATTAATATATCAGTACATCAAGTAGATCACTTTATTATAAAGGTAGTTTTGCTGCATGTAATAATAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

164

Amino Acids

19.83

Weight (kDa)

9.08

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	14 - 120	7.7e-22	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019344)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata	RLG00000027707
rosa_roxburghii	Rroxscaffold_4G00294740
rosa_rugosa	Rorug01G0291100
rosa_samantha	Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	3 cut(s)	179, 246, 438
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	1 cut(s)	77
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	369
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	299, 493
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	149, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	248, 347
Bse21I	CCTNAGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	149, 237
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	248, 347
BseXI	GCAGC	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	64, 190, 448
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	248, 347
BssECI	CCNNGG	2 cut(s)	149, 237
BssMI	GATC	3 cut(s)	64, 190, 448
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	149, 237
Bst2BI	CACGAG	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	67, 193, 451
BstMBI	GATC	3 cut(s)	64, 190, 448
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	255
Csp6I	GTAC	3 cut(s)	178, 245, 437
CviAII	CATG	4 cut(s)	143, 150, 227, 479
CviJI	RGCY	2 cut(s)	70, 148
CviKI_1	RGCY	2 cut(s)	70, 148
CviQI	GTAC	3 cut(s)	178, 245, 437
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	66, 192, 450
DpnII	GATC	3 cut(s)	64, 190, 448
Eco130I	CCWWGG	2 cut(s)	149, 237
Eco81I	CCTNAGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	149, 237
ErhI	CCWWGG	2 cut(s)	149, 237
FaeI	CATG	4 cut(s)	146, 153, 230, 482
FatI	CATG	4 cut(s)	142, 149, 226, 478
Fnu4HI	GCNGC	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	2 cut(s)	299, 493
GluI	GCNGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	146, 153, 230, 482
HphI	GGTGA	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	352, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	146, 153, 230, 482
Kzo9I	GATC	3 cut(s)	64, 190, 448
LpnPI	CCDG	5 cut(s)	96, 261, 328, 338, 381
Lsp1109I	GCAGC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	299, 493
MalI	GATC	3 cut(s)	66, 192, 450
MboI	GATC	3 cut(s)	64, 190, 448
MboII	GAAGA	5 cut(s)	16, 43, 50, 97, 103
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	4 cut(s)	8, 55, 364, 376
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	64, 190, 448
NlaIII	CATG	4 cut(s)	146, 153, 230, 482
NspI	RCATGY	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	477
Ple19I	CGATCG	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	461
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	3 cut(s)	179, 246, 438
RsaNI	GTAC	3 cut(s)	178, 245, 437
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	3 cut(s)	64, 190, 448
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	4 cut(s)	72, 316, 387, 468
Sse9I	AATT	1 cut(s)	77
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	299, 493
StyI	CCWWGG	2 cut(s)	149, 237
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	77
TatI	WGTACW	2 cut(s)	177, 436
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	5 cut(s)	17, 59, 104, 106, 243
TspRI	CASTG	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	299, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.