RLG00000027707
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019344
Physical Location & Seq
Reverse (-)
14186797 .. 14191627
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027707

Sequence Viewer

Length: 1455 bp
ATGAAGATGGACAGAGGAACTTATATCATCGTAAAGGAAGATATAAAGTTCCTCCCAAGTGAGGATCAGCTCATCAAATTTTTGAAGATGAAGATTGATGGTAGATACTCAGGGTTCATATCCGAAATCAACTTATACAAGCACGAGCCATGGGATTTTCCCGCATTATCAGTGGTAAAGTTCAGTGAAGAGTGGTTCTTCTTCACAGAGAATAGCAGAAAGTACAAGACAAGCGATCGAAGCAACAGACAAACAGAAAAGGGTTATTGGCATGAAACTTCCAAGGAAGTACCAGTGGTCAATACTAATGACAAGTCTAAAGTCATTGGCAGAAAACGATTTCTAGTATTCTACAAAGGTCGTGCTTCTCGTAAAGAAAAGACTAACTGGGTTATGCAGGAGTATTTTGTTCTTGAGGCTAAGCTCGAGACGAACTTAGTGCTTTGTCGCATAAAGCAGAAATCAGTGGGGAGTTCTCGTGAAGATAGTAACAACGGTATTGTATTTGATATTGAGGGGACAGAGATGACTGCAAACTTGACGTTTCCAGAGGGCTTTAAGTTCCAACCATCAGAAGAGCGGCTGGTGAACCATTACTTACAGAAGAAGCTATTATTCCCGGAAATTGATTTATGTCAATATGAGCCTCACGAATTACCAGCATTATCATTGATAGAGTCGAATAAAGAGTGGTTTTTCTTCAATCGGGGGAGAGGCAGAAGAACTAAACAAGGTTACTGGAAGAAAACTGGATCTGGCCGTAAAATAAAGGCTTCAGATAAGTCGAACATTGGTGAACTGAGGCACATGACATTCCATTGCTCTCCCAAAGGGCAGGTGACTGCATGGGTTATACACGAGTATTCTCTTCTTCCCGACCAGGGGGACATAGTATTGTGTCGGTTAAAGTTAAAGTCAGTTGACGATACTGGAATTACTTCTGATGATTTGGATATGGAGGACGTTCCAGAGCTACTTGATCAACCAGAAGTAAATCTGGATTCACTCTTTCCTCCACTTGAGCCACAACAGGAGTGCCGCCCCTACGTGCTGCAGTCACCATTATCCACAGAGCTGGGAAATGATCCAAACACCGATGTCTATTACAGTGAATGCAGTAAGTGGCAATGTACATCTGAAAAGAATTCAACCAATGATCATGAGAAATCAGTTAGACATGCCATGGCTAAGTTTCAAAATCGAGCTACAGCTCATACAATTTTGGAGGTGAGAATGGTGCATCCTCAAACCGAAGATTCTGCAGAACTCGGTGACGCTCTGCATTATAATGAATGTAGTGAGCTTCAATCTCCATTTGTGGACAATGATTCATCTCTTACAGAGTTTTTGAATACATGTATTGCTGACCAGGATTATTACTCCTCTGAAGAATCAGCACTGATTCCTTCCAAAGACTCCAACCTAGCTACTAAAGTTATAAGGAAGGGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

485

Amino Acids

56.03

Weight (kDa)

5.77

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 135 7.6e-30 No apical meristem (NAM) protein
NAM PF02365 183 - 290 4.5e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata RLG00000027707
rosa_roxburghii Rroxscaffold_4G00294740
rosa_rugosa Rorug01G0291100
rosa_samantha Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1287, 1439
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 580
AciI CCGC 3 cut(s) 162, 580, 1039
AclWI GGATC 3 cut(s) 72, 760, 1079
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 77, 1144
AcuI CTGAAG 2 cut(s) 759, 1407
AfaI GTAC 3 cut(s) 224, 291, 1132
AfiI CCNNNNNNNGG 3 cut(s) 61, 881, 882
AflIII ACRYGT 1 cut(s) 1355
AgsI TTSAA 6 cut(s) 85, 703, 1149, 1196, 1307, 1351
AjnI CCWGG 2 cut(s) 879, 1368
AluBI AGCT 9 cut(s) 70, 424, 610, 973, 1075, 1205, 1211, 1303, 1427
AluI AGCT 9 cut(s) 70, 424, 610, 973, 1075, 1205, 1211, 1303, 1427
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 72, 760, 1079
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 1 cut(s) 757
ApeKI GCWGC 1 cut(s) 1051
ApoI RAATTY 2 cut(s) 77, 1144
Asp700I GAANNNNTTC 1 cut(s) 937
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 6 cut(s) 598, 806, 850, 1050, 1240, 1283
AvaI CYCGRG 1 cut(s) 425
BauI CACGAG 3 cut(s) 143, 477, 857
BbvI GCAGC 1 cut(s) 1038
BccI CCATC 2 cut(s) 92, 577
BceAI ACGGC 1 cut(s) 744
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 1241, 1275
BciT130I CCWGG 2 cut(s) 881, 1370
BclI TGATCA 2 cut(s) 979, 1156
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 344, 1424
BfmI CTRYAG 3 cut(s) 1052, 1206, 1260
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 3 cut(s) 581, 1039, 1052
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 3 cut(s) 582, 1040, 1053
Bme1390I CCNGG 3 cut(s) 620, 881, 1370
BmeT110I CYCGRG 1 cut(s) 425
BmrFI CCNGG 3 cut(s) 620, 881, 1370
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 1249
BmuI ACTGGG 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 434, 1040
BpuMI CCSGG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 1048
BsaJI CCNNGG 4 cut(s) 149, 282, 880, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 881, 882
Bse1I ACTGG 5 cut(s) 293, 392, 743, 754, 934
Bse3DI GCAATG 2 cut(s) 817, 1133
BseBI CCWGG 2 cut(s) 881, 1370
BseDI CCNNGG 4 cut(s) 149, 282, 880, 1182
BseGI GGATG 1 cut(s) 1240
BseLI CCNNNNNNNGG 3 cut(s) 61, 881, 882
BseMI GCAATG 2 cut(s) 817, 1133
BseMII CTCAG 2 cut(s) 123, 791
BseNI ACTGG 5 cut(s) 293, 392, 743, 754, 934
BseRI GAGGAG 1 cut(s) 1372
BseXI GCAGC 1 cut(s) 1038
BseYI CCCAGC 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 620
BslFI GGGAC 2 cut(s) 532, 899
BslI CCNNNNNNNGG 3 cut(s) 61, 881, 882
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 532, 899
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 1 cut(s) 759
BsoBI CYCGRG 1 cut(s) 425
Bsp1407I TGTACA 1 cut(s) 1130
Bsp143I GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 2 cut(s) 149, 1182
BspACI CCGC 3 cut(s) 162, 580, 1039
BspANI GGCC 1 cut(s) 759
BspCNI CTCAG 2 cut(s) 122, 792
BspHI TCATGA 1 cut(s) 1159
BspMAI CTGCAG 2 cut(s) 1056, 1264
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 72, 760, 1079
BspQI GCTCTTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 817, 1133
BsrGI TGTACA 1 cut(s) 1130
BsrI ACTGG 5 cut(s) 293, 392, 743, 754, 934
BssECI CCNNGG 4 cut(s) 149, 282, 880, 1182
BssMI GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
BssSI CACGAG 3 cut(s) 143, 477, 857
BssT1I CCWWGG 3 cut(s) 149, 282, 1182
Bst2BI CACGAG 3 cut(s) 143, 477, 857
Bst2UI CCWGG 2 cut(s) 881, 1370
Bst4CI ACNGT 2 cut(s) 497, 1109
Bst6I CTCTTC 3 cut(s) 183, 570, 873
BstAUI TGTACA 1 cut(s) 1130
BstBAI YACGTR 1 cut(s) 1048
BstDEI CTNAG 5 cut(s) 109, 420, 436, 800, 1188
BstDSI CCRYGG 2 cut(s) 149, 1182
BstF5I GGATG 1 cut(s) 1240
BstKTI GATC 6 cut(s) 67, 238, 755, 982, 1087, 1159
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 881, 1370
BstNSI RCATGY 2 cut(s) 1181, 1359
BstSCI CCNGG 3 cut(s) 618, 879, 1368
BstSFI CTRYAG 3 cut(s) 1052, 1206, 1260
BstV1I GCAGC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 1 cut(s) 759
BtgI CCRYGG 2 cut(s) 149, 1182
BtsCI GGATG 1 cut(s) 1240
BtsIMutI CAGTG 6 cut(s) 177, 190, 300, 471, 1114, 1397
BveI ACCTGC 1 cut(s) 826
CciI TCATGA 1 cut(s) 1159
CseI GACGC 1 cut(s) 1283
Csp6I GTAC 3 cut(s) 223, 290, 1131
CviAII CATG 8 cut(s) 150, 272, 808, 846, 1160, 1178, 1183, 1356
CviQI GTAC 3 cut(s) 223, 290, 1131
DdeI CTNAG 5 cut(s) 109, 420, 436, 800, 1188
DpnI GATC 6 cut(s) 66, 237, 754, 981, 1086, 1158
DpnII GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 183, 570, 873
EarI CTCTTC 3 cut(s) 183, 570, 873
Eco130I CCWWGG 3 cut(s) 149, 282, 1182
Eco57I CTGAAG 2 cut(s) 759, 1407
Eco88I CYCGRG 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 2 cut(s) 879, 1368
EcoT14I CCWWGG 3 cut(s) 149, 282, 1182
ErhI CCWWGG 3 cut(s) 149, 282, 1182
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 8 cut(s) 153, 275, 811, 849, 1163, 1181, 1186, 1359
FaqI GGGAC 2 cut(s) 532, 899
FatI CATG 8 cut(s) 149, 271, 807, 845, 1159, 1177, 1182, 1355
FauI CCCGC 1 cut(s) 169
FbaI TGATCA 2 cut(s) 979, 1156
Fnu4HI GCNGC 3 cut(s) 581, 1039, 1052
FokI GGATG 1 cut(s) 1227
Fsp4HI GCNGC 3 cut(s) 581, 1039, 1052
FspBI CTAG 2 cut(s) 344, 1424
GluI GCNGC 3 cut(s) 581, 1039, 1052
GsaI CCCAGC 1 cut(s) 1079
HaeIII GGCC 1 cut(s) 759
HapII CCGG 1 cut(s) 620
HgaI GACGC 1 cut(s) 1283
Hin1II CATG 8 cut(s) 153, 275, 811, 849, 1163, 1181, 1186, 1359
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 7 cut(s) 677, 1001, 1256, 1328, 1391, 1402, 1415
HpaII CCGG 1 cut(s) 620
HphI GGTGA 6 cut(s) 598, 806, 850, 1050, 1240, 1283
Hpy166II GTNNAC 4 cut(s) 589, 797, 922, 1321
Hpy188I TCNGA 6 cut(s) 124, 574, 778, 943, 1138, 1387
Hpy188III TCNNGA 9 cut(s) 413, 427, 479, 548, 650, 875, 968, 998, 1160
Hpy8I GTNNAC 4 cut(s) 589, 797, 922, 1321
HpyAV CCTTC 2 cut(s) 1416, 1438
HpyCH4III ACNGT 2 cut(s) 497, 1109
HpyCH4IV ACGT 3 cut(s) 542, 963, 1047
HpyCH4V TGCA 8 cut(s) 397, 533, 845, 1054, 1116, 1240, 1262, 1282
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 5 cut(s) 109, 420, 436, 800, 1188
HpySE526I ACGT 3 cut(s) 542, 963, 1047
Hsp92II CATG 8 cut(s) 153, 275, 811, 849, 1163, 1181, 1186, 1359
Ksp22I TGATCA 2 cut(s) 979, 1156
Kzo9I GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
LguI GCTCTTC 1 cut(s) 570
Lsp1109I GCAGC 1 cut(s) 1038
LweI GCATC 1 cut(s) 1249
MaeI CTAG 2 cut(s) 344, 1424
MaeII ACGT 3 cut(s) 542, 963, 1047
MaeIII GTNAC 5 cut(s) 488, 734, 838, 1056, 1271
MalI GATC 6 cut(s) 66, 237, 754, 981, 1086, 1158
MbiI CCGCTC 1 cut(s) 580
MboI GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
MflI RGATCY 1 cut(s) 752
MluCI AATT 6 cut(s) 77, 624, 653, 933, 1144, 1218
MlyI GAGTC 2 cut(s) 686, 1409
MmeI TCCRAC 2 cut(s) 589, 1443
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 3 cut(s) 558, 905, 911
MslI CAYNNNNRTG 1 cut(s) 1287
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 3 cut(s) 620, 881, 1370
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 2 cut(s) 881, 1370
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 2 cut(s) 149, 1182
NdeII GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
NlaIII CATG 8 cut(s) 153, 275, 811, 849, 1163, 1181, 1186, 1359
NmuCI GTSAC 3 cut(s) 838, 1056, 1271
NspI RCATGY 2 cut(s) 1181, 1359
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 1159
PaqCI CACCTGC 1 cut(s) 826
PciI ACATGT 1 cut(s) 1355
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 5 cut(s) 1001, 1256, 1328, 1391, 1402
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 3 cut(s) 582, 1040, 1053
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 685, 1409
PpsI GAGTC 2 cut(s) 685, 1409
Ppu21I YACGTR 1 cut(s) 1048
PscI ACATGT 1 cut(s) 1355
PsiI TTATAA 2 cut(s) 1287, 1439
Psp6I CCWGG 2 cut(s) 879, 1368
PspFI CCCAGC 1 cut(s) 1075
PspGI CCWGG 2 cut(s) 879, 1368
PstI CTGCAG 2 cut(s) 1056, 1264
PsuI RGATCY 1 cut(s) 752
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 3 cut(s) 224, 291, 1132
RsaNI GTAC 3 cut(s) 223, 290, 1131
RseI CAYNNNNRTG 1 cut(s) 1287
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 558, 905, 911
SatI GCNGC 3 cut(s) 581, 1039, 1052
Sau3AI GATC 6 cut(s) 64, 235, 752, 979, 1084, 1156
SchI GAGTC 2 cut(s) 686, 1409
ScrFI CCNGG 3 cut(s) 620, 881, 1370
SfaNI GCATC 1 cut(s) 1249
SfcI CTRYAG 3 cut(s) 1052, 1206, 1260
Sfr274I CTCGAG 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 1287
SmlI CTYRAG 3 cut(s) 413, 425, 1019
SmoI CTYRAG 3 cut(s) 413, 425, 1019
Sse9I AATT 6 cut(s) 77, 624, 653, 933, 1144, 1218
SsiI CCGC 3 cut(s) 162, 580, 1039
SspMI CTAG 2 cut(s) 344, 1424
StyD4I CCNGG 3 cut(s) 618, 879, 1368
StyI CCWWGG 3 cut(s) 149, 282, 1182
TaaI ACNGT 2 cut(s) 497, 1109
TaiI ACGT 3 cut(s) 545, 966, 1050
TaqI TCGA 5 cut(s) 238, 426, 680, 785, 1201
TasI AATT 6 cut(s) 77, 624, 653, 933, 1144, 1218
TatI WGTACW 2 cut(s) 222, 1130
TauI GCSGC 2 cut(s) 583, 1041
TfiI GAWTC 5 cut(s) 1001, 1256, 1328, 1391, 1402
Tru1I TTAA 3 cut(s) 558, 905, 911
Tru9I TTAA 3 cut(s) 558, 905, 911
TscAI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1404
TseFI GTSAC 3 cut(s) 838, 1056, 1271
TseI GCWGC 1 cut(s) 1051
Tsp45I GTSAC 3 cut(s) 838, 1056, 1271
TspDTI ATGAA 6 cut(s) 17, 104, 106, 288, 1305, 1320
TspRI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1404
XapI RAATTY 2 cut(s) 77, 1144
XceI RCATGY 2 cut(s) 1181, 1359
XhoI CTCGAG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 2 cut(s) 344, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.