Rorug01G0291100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0019344
Physical Location & Seq
Reverse (-)
40681383 .. 40682628
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0291100.1

Sequence Viewer

Length: 981 bp
ATGGCTTCCTTCATCTCAGATCATCATTACAGCGATCCAGAGATTCTGGTACGAAAGAATAATCGATCTGTGACAACGTTGACACTCAATAGACCTCGAAAATTGAACGCGCTCTCAGTTTCCATGCTCTCGCGGCTGTCTGAACTGTTCCTCCGCTACGAGCACGATCCCCATGTCAAGTTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCGCCGGGGGGCGACGTTGCGTCTGTAGCTCATCATCTCTACAATGGCAATTTGAGAGCTGCTTTCAAAAGTTTCGCAACTGCATACACCTTAATGTACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGGACCGGGGCAGGTGTTTCAATACACGGTAGTTTTCGTGTGGCAACAGAGAAGACGGTGTTTGCCATGCCGGAAGCAGCTATAGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGAGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCATCGAAATTGGCTTCGGTAGAAGAAGCCCTAGTAAGAACACTCGGTGTTTTTCCTAATACAAGCTCAAGTGATGACCATGCTTTTATTTCAGCTATTCTAGATGCATACTCTGAGCAACCAGCTCTGAAAGTGAACAGTGCTTACCATCGTATGGATGTTATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGTAGCCTTGAAAAGGAGTTTGCTACTATAACCAACATAAGTGATCATCATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTGTTAGAGATAGAGAGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

326

Amino Acids

35.64

Weight (kDa)

7.22

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 21 - 268 2.3e-25 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 25 - 323 8.1e-93 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata RLG00000027707
rosa_roxburghii Rroxscaffold_4G00294740
rosa_rugosa Rorug01G0291100
rosa_samantha Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 742
AccII CGCG 2 cut(s) 110, 133
AciI CCGC 3 cut(s) 133, 154, 931
AclI AACGTT 1 cut(s) 77
AclWI GGATC 2 cut(s) 29, 161
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 2 cut(s) 51, 311
AfiI CCNNNNNNNGG 3 cut(s) 467, 742, 805
AgsI TTSAA 5 cut(s) 106, 280, 387, 803, 898
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 336, 496
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 7 cut(s) 197, 242, 272, 446, 654, 683, 713
AluI AGCT 7 cut(s) 197, 242, 272, 446, 654, 683, 713
Alw21I GWGCWC 1 cut(s) 165
AlwI GGATC 2 cut(s) 29, 161
ApeKI GCWGC 3 cut(s) 272, 443, 934
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 369, 545
AsuC2I CCSGG 2 cut(s) 219, 373
AsuHPI GGTGA 1 cut(s) 959
AvaII GGWCC 2 cut(s) 369, 545
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 259, 455, 921
BccI CCATC 1 cut(s) 744
BciT130I CCWGG 2 cut(s) 338, 498
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 2 cut(s) 219, 373
BfaI CTAG 4 cut(s) 569, 620, 689, 979
BfmI CTRYAG 2 cut(s) 237, 447
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 5 cut(s) 134, 273, 444, 932, 935
BlsI GCNGC 5 cut(s) 135, 274, 445, 933, 936
Bme1390I CCNGG 4 cut(s) 219, 338, 373, 498
Bme18I GGWCC 2 cut(s) 369, 545
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 369, 545
BmiI GGNNCC 3 cut(s) 370, 472, 532
BmrFI CCNGG 4 cut(s) 219, 338, 373, 498
BmsI GCATC 2 cut(s) 682, 890
BpiI GAAGAC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 219, 373
Bsa29I ATCGAT 2 cut(s) 64, 914
BsaJI CCNNGG 4 cut(s) 218, 336, 363, 372
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 742, 805
BseBI CCWGG 2 cut(s) 338, 498
BseCI ATCGAT 2 cut(s) 64, 914
BseDI CCNNGG 4 cut(s) 218, 336, 363, 372
BseGI GGATG 1 cut(s) 751
BseLI CCNNNNNNNGG 3 cut(s) 467, 742, 805
BseMII CTCAG 3 cut(s) 30, 129, 693
BseXI GCAGC 3 cut(s) 259, 455, 921
Bsh1236I CGCG 2 cut(s) 110, 133
BshNI GGYRCC 1 cut(s) 530
BshVI ATCGAT 2 cut(s) 64, 914
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 218, 372, 437
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 467, 742, 805
BsmFI GGGAC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 6 cut(s) 19, 34, 65, 166, 835, 911
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 3 cut(s) 133, 154, 931
BspCNI CTCAG 3 cut(s) 29, 128, 694
BspDI ATCGAT 2 cut(s) 64, 914
BspFNI CGCG 2 cut(s) 110, 133
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 3 cut(s) 370, 472, 532
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 29, 161
BspT107I GGYRCC 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 218, 336, 363, 372
BssMI GATC 6 cut(s) 19, 34, 65, 166, 835, 911
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 338, 498
Bst4CI ACNGT 7 cut(s) 147, 203, 395, 424, 545, 728, 778
Bst6I CTCTTC 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 16, 115, 702
BstDSI CCRYGG 1 cut(s) 363
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 1 cut(s) 751
BstFNI CGCG 2 cut(s) 110, 133
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 22, 37, 68, 169, 838, 914
BstMBI GATC 6 cut(s) 19, 34, 65, 166, 835, 911
BstMWI GCNNNNNNNGC 2 cut(s) 133, 239
BstNI CCWGG 2 cut(s) 338, 498
BstSCI CCNGG 4 cut(s) 217, 336, 371, 496
BstSFI CTRYAG 2 cut(s) 237, 447
BstUI CGCG 2 cut(s) 110, 133
BstV1I GCAGC 3 cut(s) 259, 455, 921
BstV2I GAAGAC 1 cut(s) 425
Bsu15I ATCGAT 2 cut(s) 64, 914
BsuTUI ATCGAT 2 cut(s) 64, 914
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 733, 783
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 558
CciI TCATGA 1 cut(s) 841
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 369, 545
ClaI ATCGAT 2 cut(s) 64, 914
CseI GACGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 50, 310
CviAII CATG 6 cut(s) 124, 173, 364, 433, 668, 842
CviQI GTAC 2 cut(s) 50, 310
DdeI CTNAG 3 cut(s) 16, 115, 702
DpnI GATC 6 cut(s) 21, 36, 67, 168, 837, 913
DpnII GATC 6 cut(s) 19, 34, 65, 166, 835, 911
DraIII CACNNNGTG 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 777
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 369, 545
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 336, 496
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 2 cut(s) 697, 883
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 6 cut(s) 127, 176, 367, 436, 671, 845
FaqI GGGAC 1 cut(s) 382
FatI CATG 6 cut(s) 123, 172, 363, 432, 667, 841
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 5 cut(s) 134, 273, 444, 932, 935
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 5 cut(s) 134, 273, 444, 932, 935
FspBI CTAG 4 cut(s) 569, 620, 689, 979
GlaI GCGC 1 cut(s) 111
GluI GCNGC 5 cut(s) 134, 273, 444, 932, 935
HapII CCGG 3 cut(s) 218, 372, 437
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 112
Hin1II CATG 6 cut(s) 127, 176, 367, 436, 671, 845
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 4 cut(s) 43, 501, 916, 975
HpaII CCGG 3 cut(s) 218, 372, 437
HphI GGTGA 1 cut(s) 959
Hpy166II GTNNAC 2 cut(s) 81, 724
Hpy188I TCNGA 4 cut(s) 19, 142, 703, 717
Hpy188III TCNNGA 7 cut(s) 38, 461, 489, 548, 689, 842, 920
Hpy8I GTNNAC 2 cut(s) 81, 724
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 19, 917, 921
HpyCH4III ACNGT 7 cut(s) 147, 203, 395, 424, 545, 728, 778
HpyCH4IV ACGT 2 cut(s) 77, 228
HpyCH4V TGCA 5 cut(s) 296, 695, 881, 937, 954
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 239
HpyF3I CTNAG 3 cut(s) 16, 115, 702
HpySE526I ACGT 2 cut(s) 77, 228
Hsp92II CATG 6 cut(s) 127, 176, 367, 436, 671, 845
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 6 cut(s) 19, 34, 65, 166, 835, 911
Lsp1109I GCAGC 3 cut(s) 259, 455, 921
LweI GCATC 2 cut(s) 682, 890
MaeI CTAG 4 cut(s) 569, 620, 689, 979
MaeII ACGT 2 cut(s) 77, 228
MaeIII GTNAC 1 cut(s) 70
MalI GATC 6 cut(s) 21, 36, 67, 168, 837, 913
MboI GATC 6 cut(s) 19, 34, 65, 166, 835, 911
MboII GAAGA 5 cut(s) 430, 623, 794, 846, 910
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 4 cut(s) 101, 262, 596, 861
MnlI CCTC 5 cut(s) 105, 161, 446, 484, 598
Mph1103I ATGCAT 2 cut(s) 697, 883
MseI TTAA 3 cut(s) 305, 791, 890
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 3 cut(s) 218, 372, 437
MspR9I CCNGG 4 cut(s) 219, 338, 373, 498
MvaI CCWGG 2 cut(s) 338, 498
MvnI CGCG 2 cut(s) 110, 133
MwoI GCNNNNNNNGC 2 cut(s) 133, 239
NciI CCSGG 2 cut(s) 219, 373
NcoI CCATGG 1 cut(s) 363
NdeII GATC 6 cut(s) 19, 34, 65, 166, 835, 911
NlaIII CATG 6 cut(s) 127, 176, 367, 436, 671, 845
NlaIV GGNNCC 3 cut(s) 370, 472, 532
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 2 cut(s) 697, 883
PagI TCATGA 1 cut(s) 841
PaqCI CACCTGC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 43, 501, 916
PflMI CCANNNNNTGG 1 cut(s) 742
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 5 cut(s) 135, 274, 445, 933, 936
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 336, 496
PspGI CCWGG 2 cut(s) 336, 496
PspN4I GGNNCC 3 cut(s) 370, 472, 532
PspPI GGNCC 2 cut(s) 369, 545
PsrI GAACNNNNNNTAC 2 cut(s) 716, 748
RsaI GTAC 2 cut(s) 51, 311
RsaNI GTAC 2 cut(s) 50, 310
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 3 cut(s) 305, 791, 890
SatI GCNGC 5 cut(s) 134, 273, 444, 932, 935
Sau3AI GATC 6 cut(s) 19, 34, 65, 166, 835, 911
Sau96I GGNCC 2 cut(s) 369, 545
ScrFI CCNGG 4 cut(s) 219, 338, 373, 498
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 2 cut(s) 682, 890
SfcI CTRYAG 2 cut(s) 237, 447
SinI GGWCC 2 cut(s) 369, 545
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 4 cut(s) 101, 262, 596, 861
SsiI CCGC 3 cut(s) 133, 154, 931
SspMI CTAG 4 cut(s) 569, 620, 689, 979
StyD4I CCNGG 4 cut(s) 217, 336, 371, 496
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 7 cut(s) 147, 203, 395, 424, 545, 728, 778
TaiI ACGT 2 cut(s) 80, 231
TaqI TCGA 5 cut(s) 64, 97, 593, 914, 919
TasI AATT 4 cut(s) 101, 262, 596, 861
TatI WGTACW 1 cut(s) 309
TauI GCSGC 2 cut(s) 136, 934
TfiI GAWTC 3 cut(s) 43, 501, 916
Tru1I TTAA 3 cut(s) 305, 791, 890
Tru9I TTAA 3 cut(s) 305, 791, 890
TscAI CASTG 2 cut(s) 733, 783
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 272, 443, 934
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 333, 846, 858, 887
TspRI CASTG 2 cut(s) 733, 783
Van91I CCANNNNNTGG 1 cut(s) 742
VpaK11BI GGWCC 2 cut(s) 369, 545
XagI CCTNNNNNAGG 1 cut(s) 803
XbaI TCTAGA 1 cut(s) 688
XspI CTAG 4 cut(s) 569, 620, 689, 979
Zsp2I ATGCAT 2 cut(s) 697, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.