Rh1BG264300

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0019344
Physical Location & Seq
Forward (+)
39860829 .. 39878449
17621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG264300.1

Sequence Viewer

Length: 516 bp
ATGAAGATGGACAGGGGAACTTATGTCATCGTAAAGGAAGATATGAAGTTCCTCCCAAGTGAGGATCAGCTCATCAAATTTTTGAAGATGAAGATTGATGGTAGATACTCTGGGTTCATATCCGAAATCAACTTATACAAGCACGAGCCATGGGATTTGCCCGCATTATCATTGATAGAGTCGAATAAAGAGTGGTTTTTCTTCAATCGGGGGAGAGGCAGAACAACTAAACAAGGTTACTGGAAGAAAACTGGATCTGGCCGTAAAATAAAGGCTTCAGATAAATCGATCATTAGTGAACTGCGGCACATGACATTCCATTGCTCTCCCAAAGGGCAGGTGACCGCATGGGTTATACACGAGTATTCTCTTCTTCCCGACCAGGGGGACATAGTTTTGTGTCGGTTAAAGTTAAAGTCAGTTGACGATACTGCAACTACTTCTGATGATTTGGATATGGAGGACGTTCCAGAGGAAGATCATGGCCGCGTGGAACGCAATGCTTTCGGGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

171

Amino Acids

19.81

Weight (kDa)

6.97

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 124 4.1e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata RLG00000027707
rosa_roxburghii Rroxscaffold_4G00294740
rosa_rugosa Rorug01G0291100
rosa_samantha Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccII CGCG 1 cut(s) 489
AciI CCGC 4 cut(s) 162, 304, 345, 487
AclWI GGATC 2 cut(s) 72, 262
AcoI YGGCCR 2 cut(s) 259, 484
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 61, 383, 384
AgsI TTSAA 2 cut(s) 85, 205
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwI GGATC 2 cut(s) 72, 262
AoxI GGCC 2 cut(s) 259, 484
ApoI RAATTY 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 352
BauI CACGAG 2 cut(s) 143, 359
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 246
BcgI CGANNNNNNTGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 2 cut(s) 305, 487
BlsI GCNGC 2 cut(s) 306, 488
Bme1390I CCNGG 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 149, 382
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 383, 384
Bse1I ACTGG 2 cut(s) 245, 256
Bse3DI GCAATG 2 cut(s) 319, 505
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 149, 382
BseLI CCNNNNNNNGG 3 cut(s) 61, 383, 384
BseMI GCAATG 2 cut(s) 319, 505
BseNI ACTGG 2 cut(s) 245, 256
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 2 cut(s) 261, 486
BshVI ATCGAT 1 cut(s) 287
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 61, 383, 384
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 2 cut(s) 261, 486
Bsp143I GATC 4 cut(s) 64, 254, 288, 478
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 4 cut(s) 162, 304, 345, 487
BspANI GGCC 2 cut(s) 261, 486
BspDI ATCGAT 1 cut(s) 287
BspFNI CGCG 1 cut(s) 489
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 2 cut(s) 72, 262
BsrDI GCAATG 2 cut(s) 319, 505
BsrI ACTGG 2 cut(s) 245, 256
BssECI CCNNGG 2 cut(s) 149, 382
BssMI GATC 4 cut(s) 64, 254, 288, 478
BssSI CACGAG 2 cut(s) 143, 359
BssT1I CCWWGG 1 cut(s) 149
Bst2BI CACGAG 2 cut(s) 143, 359
Bst2UI CCWGG 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 149
BstEII GGTNACC 1 cut(s) 340
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 4 cut(s) 67, 257, 291, 481
BstMBI GATC 4 cut(s) 64, 254, 288, 478
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNI CCWGG 1 cut(s) 383
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 381
BstUI CGCG 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 287
BsuRI GGCC 2 cut(s) 261, 486
BsuTUI ATCGAT 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 287
CviAII CATG 4 cut(s) 150, 310, 348, 482
CviJI RGCY 5 cut(s) 70, 148, 261, 275, 486
CviKI_1 RGCY 5 cut(s) 70, 148, 261, 275, 486
DpnI GATC 4 cut(s) 66, 256, 290, 480
DpnII GATC 4 cut(s) 64, 254, 288, 478
EaeI YGGCCR 2 cut(s) 259, 484
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 4 cut(s) 153, 313, 351, 485
FaqI GGGAC 1 cut(s) 401
FatI CATG 4 cut(s) 149, 309, 347, 481
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 305, 487
Fsp4HI GCNGC 2 cut(s) 305, 487
GluI GCNGC 2 cut(s) 305, 487
HaeIII GGCC 2 cut(s) 261, 486
Hin1II CATG 4 cut(s) 153, 313, 351, 485
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 299, 424
Hpy188I TCNGA 3 cut(s) 124, 280, 445
Hpy188III TCNNGA 2 cut(s) 377, 470
Hpy8I GTNNAC 2 cut(s) 299, 424
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 4 cut(s) 153, 313, 351, 485
Kzo9I GATC 4 cut(s) 64, 254, 288, 478
LpnPI CCDG 8 cut(s) 96, 226, 237, 243, 323, 368, 395, 483
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 236, 340
MalI GATC 4 cut(s) 66, 256, 290, 480
MboI GATC 4 cut(s) 64, 254, 288, 478
MboII GAAGA 9 cut(s) 16, 50, 97, 103, 193, 256, 362, 365, 488
MflI RGATCY 1 cut(s) 254
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 5 cut(s) 55, 62, 209, 454, 466
MseI TTAA 2 cut(s) 407, 413
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 495
NcoI CCATGG 1 cut(s) 149
NdeII GATC 4 cut(s) 64, 254, 288, 478
NlaIII CATG 4 cut(s) 153, 313, 351, 485
NmuCI GTSAC 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 306, 488
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 254
SaqAI TTAA 2 cut(s) 407, 413
SatI GCNGC 2 cut(s) 305, 487
Sau3AI GATC 4 cut(s) 64, 254, 288, 478
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 383
SetI ASST 4 cut(s) 72, 238, 342, 468
Sse9I AATT 1 cut(s) 77
SsiI CCGC 4 cut(s) 162, 304, 345, 487
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 149
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 182, 287
TasI AATT 1 cut(s) 77
TauI GCSGC 2 cut(s) 307, 489
Tru1I TTAA 2 cut(s) 407, 413
Tru9I TTAA 2 cut(s) 407, 413
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 17, 59, 104, 106
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.