RchiOBHm_Chr1g0361731
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019344
Physical Location & Seq
Forward (+)
53579112 .. 53589250
10139 bp
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UTR
Exon/CDS
Intron
PRQ58659

Sequence Viewer

Length: 951 bp
ATGAAGGGGACAGAGATGACTGCAACCTTGACGTTTCCAGAGGGCTTTAAGTTCCAACCATCAGAAGAGCGGCTGGTGAACCATTACTTACGGAAGAAGCTATTATTCCCGGAAATTGATTTATGTCAATATGAGCCTCATGAATTACCAGAGTCGAATAAAGAGTGGTTTTTCTTCAATCGGGGGAGAGGCAGAAGAACTAAACAAGGTTACTGGAAGAAAACTGGATGTGGCCGTAAAATAAGGGCTTCAGATAAGTCGATCATTGGAGAACTGAGGCACATGACATTCCATTGCTCTCCCAAAGGGCAGGTGACTGCATGGGTTATACACGAGTATTCTCTTCTTCCCGACCAGGGGGACATAGTATTGAGTCGGTTAAAGTTAAAGTCAGTTGACGATACTGGAATTACTTCTGATGATTTGGATATGGAGGACGTTCCAGAGCTACTTGATCAGCCAGAAGTAAATCTGGATTCACTCTTTCCTCCACTTGAGCCACAACAGGAGTGCCGCCCCGACGTACGGCAGTCACCATTATCCACAGAGCTGGGAAATGATCCAAACACCAATGTCTATTACAGTGAATGCAGTAAGTGGCAATGTGCATTAGGGACTGATGATTCATATCTTAGACATCTGAAAAGAATTTCAACCAATGATCATGAGAAACCAGTTAGACATGCTATGGCTAAGTTTCAAAATCGAGCTACAGCTCGTACGATTTTGGAGGTGCATCCTCAAACCGAAGATTCTGCAGAACTCGGTGATGCTCTGCATTATAATGAATGTAGTGAGCTTCAATCTCCATTTGTGGACAATGATTCATCTCTTACAGAGTTTTTGAATACATGTATTGCTGACGAGGATTATTACTCCTCTGAAGAATCAGCACTGATTCCTTCCAAAGACTCCAACCTAGCTACTAAAGTTATAAGGAAGGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

316

Amino Acids

36.22

Weight (kDa)

5.23

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 115 4.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata RLG00000027707
rosa_roxburghii Rroxscaffold_4G00294740
rosa_rugosa Rorug01G0291100
rosa_samantha Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 783, 935
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 2 cut(s) 70, 514
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 2 cut(s) 234, 903
AfaI GTAC 2 cut(s) 525, 721
AfiI CCNNNNNNNGG 3 cut(s) 356, 357, 525
AflIII ACRYGT 1 cut(s) 851
AgsI TTSAA 5 cut(s) 178, 654, 701, 803, 847
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 7 cut(s) 100, 448, 550, 710, 716, 799, 923
AluI AGCT 7 cut(s) 100, 448, 550, 710, 716, 799, 923
AlwI GGATC 1 cut(s) 554
AoxI GGCC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 412
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 4 cut(s) 88, 325, 525, 779
BauI CACGAG 1 cut(s) 332
BccI CCATC 1 cut(s) 67
BceAI ACGGC 2 cut(s) 219, 542
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 2 cut(s) 454, 661
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 1 cut(s) 920
BfmI CTRYAG 2 cut(s) 711, 756
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 2 cut(s) 71, 514
BlsI GCNGC 2 cut(s) 72, 515
Bme1390I CCNGG 2 cut(s) 110, 356
BmrFI CCNGG 2 cut(s) 110, 356
BmsI GCATC 2 cut(s) 745, 760
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 357, 525
Bse1I ACTGG 4 cut(s) 218, 229, 409, 674
Bse3DI GCAATG 2 cut(s) 292, 608
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 233, 736
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 3 cut(s) 356, 357, 525
BseMI GCAATG 2 cut(s) 292, 608
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 4 cut(s) 218, 229, 409, 674
BseRI GAGGAG 1 cut(s) 868
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 110
BsiWI CGTACG 2 cut(s) 523, 719
BslFI GGGAC 3 cut(s) 22, 374, 628
BslI CCNNNNNNNGG 3 cut(s) 356, 357, 525
BsmFI GGGAC 3 cut(s) 22, 374, 628
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 261, 454, 559, 661
BspACI CCGC 2 cut(s) 70, 514
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 2 cut(s) 139, 664
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 292, 608
BsrI ACTGG 4 cut(s) 218, 229, 409, 674
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 261, 454, 559, 661
BssSI CACGAG 1 cut(s) 332
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 2 cut(s) 60, 348
BstDEI CTNAG 3 cut(s) 275, 632, 693
BstF5I GGATG 2 cut(s) 233, 736
BstKTI GATC 4 cut(s) 264, 457, 562, 664
BstMBI GATC 4 cut(s) 261, 454, 559, 661
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 2 cut(s) 686, 855
BstSCI CCNGG 2 cut(s) 108, 354
BstSFI CTRYAG 2 cut(s) 711, 756
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 233, 736
BtsIMutI CAGTG 2 cut(s) 589, 893
BveI ACCTGC 1 cut(s) 301
CciI TCATGA 2 cut(s) 139, 664
Csp6I GTAC 2 cut(s) 524, 720
CviAII CATG 6 cut(s) 140, 283, 321, 665, 683, 852
CviQI GTAC 2 cut(s) 524, 720
DdeI CTNAG 3 cut(s) 275, 632, 693
DpnI GATC 4 cut(s) 263, 456, 561, 663
DpnII GATC 4 cut(s) 261, 454, 559, 661
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 60, 348
EarI CTCTTC 2 cut(s) 60, 348
Eco57I CTGAAG 2 cut(s) 234, 903
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 6 cut(s) 143, 286, 324, 668, 686, 855
FaqI GGGAC 3 cut(s) 22, 374, 628
FatI CATG 6 cut(s) 139, 282, 320, 664, 682, 851
FbaI TGATCA 2 cut(s) 454, 661
Fnu4HI GCNGC 2 cut(s) 71, 514
FokI GGATG 2 cut(s) 240, 723
Fsp4HI GCNGC 2 cut(s) 71, 514
FspBI CTAG 1 cut(s) 920
GluI GCNGC 2 cut(s) 71, 514
GsaI CCCAGC 1 cut(s) 554
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 110
Hin1II CATG 6 cut(s) 143, 286, 324, 668, 686, 855
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 9 cut(s) 152, 373, 476, 623, 752, 824, 887, 898, 911
HpaII CCGG 1 cut(s) 110
HphI GGTGA 4 cut(s) 88, 325, 525, 779
Hpy166II GTNNAC 3 cut(s) 79, 397, 817
Hpy188I TCNGA 5 cut(s) 64, 253, 418, 642, 883
Hpy188III TCNNGA 6 cut(s) 38, 140, 350, 443, 473, 665
Hpy8I GTNNAC 3 cut(s) 79, 397, 817
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 912, 934
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 3 cut(s) 32, 438, 522
HpyCH4V TGCA 7 cut(s) 23, 320, 591, 608, 736, 758, 778
HpyF3I CTNAG 3 cut(s) 275, 632, 693
HpySE526I ACGT 3 cut(s) 32, 438, 522
Hsp92II CATG 6 cut(s) 143, 286, 324, 668, 686, 855
Ksp22I TGATCA 2 cut(s) 454, 661
Kzo9I GATC 4 cut(s) 261, 454, 559, 661
LguI GCTCTTC 1 cut(s) 60
LweI GCATC 2 cut(s) 745, 760
MaeI CTAG 1 cut(s) 920
MaeII ACGT 3 cut(s) 32, 438, 522
MaeIII GTNAC 3 cut(s) 209, 313, 531
MalI GATC 4 cut(s) 263, 456, 561, 663
MbiI CCGCTC 1 cut(s) 70
MboI GATC 4 cut(s) 261, 454, 559, 661
MboII GAAGA 9 cut(s) 77, 106, 166, 207, 229, 335, 338, 761, 896
MluCI AATT 4 cut(s) 114, 143, 408, 648
MlyI GAGTC 3 cut(s) 161, 382, 905
MmeI TCCRAC 2 cut(s) 79, 939
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 3 cut(s) 48, 380, 386
MslI CAYNNNNRTG 1 cut(s) 783
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 110, 356
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 356
NciI CCSGG 1 cut(s) 110
NdeII GATC 4 cut(s) 261, 454, 559, 661
NlaIII CATG 6 cut(s) 143, 286, 324, 668, 686, 855
NmuCI GTSAC 2 cut(s) 313, 531
NspI RCATGY 2 cut(s) 686, 855
PagI TCATGA 2 cut(s) 139, 664
PaqCI CACCTGC 1 cut(s) 301
PciI ACATGT 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 60
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 6 cut(s) 476, 623, 752, 824, 887, 898
Pfl23II CGTACG 2 cut(s) 523, 719
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 2 cut(s) 72, 515
PleI GAGTC 3 cut(s) 160, 381, 905
PpsI GAGTC 3 cut(s) 160, 381, 905
PscI ACATGT 1 cut(s) 851
PsiI TTATAA 2 cut(s) 783, 935
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 354
PspLI CGTACG 2 cut(s) 523, 719
PstI CTGCAG 1 cut(s) 760
RsaI GTAC 2 cut(s) 525, 721
RsaNI GTAC 2 cut(s) 524, 720
RseI CAYNNNNRTG 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 48, 380, 386
SatI GCNGC 2 cut(s) 71, 514
Sau3AI GATC 4 cut(s) 261, 454, 559, 661
SchI GAGTC 3 cut(s) 161, 382, 905
ScrFI CCNGG 2 cut(s) 110, 356
SfaNI GCATC 2 cut(s) 745, 760
SfcI CTRYAG 2 cut(s) 711, 756
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 4 cut(s) 114, 143, 408, 648
SsiI CCGC 2 cut(s) 70, 514
SspMI CTAG 1 cut(s) 920
StyD4I CCNGG 2 cut(s) 108, 354
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 3 cut(s) 35, 441, 525
TaqI TCGA 3 cut(s) 155, 260, 706
TasI AATT 4 cut(s) 114, 143, 408, 648
TauI GCSGC 2 cut(s) 73, 516
TfiI GAWTC 6 cut(s) 476, 623, 752, 824, 887, 898
Tru1I TTAA 3 cut(s) 48, 380, 386
Tru9I TTAA 3 cut(s) 48, 380, 386
TscAI CASTG 2 cut(s) 589, 900
TseFI GTSAC 2 cut(s) 313, 531
Tsp45I GTSAC 2 cut(s) 313, 531
TspDTI ATGAA 5 cut(s) 17, 156, 615, 801, 816
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 2 cut(s) 589, 900
XapI RAATTY 1 cut(s) 648
XceI RCATGY 2 cut(s) 686, 855
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.