Rh1AG301500
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019344
Physical Location & Seq
Forward (+)
53413464 .. 53417923
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG301500.1

Sequence Viewer

Length: 1476 bp
ATGAAGATGGACAGAGGAACTTATATCATCGTAAAGGAAGATATGAAGTTCCTCCCAAGTGAGGATCAGCTCATCAAATTTTTGAAGATGAAGATTGATGGTAGATACTCTGGGTTCATATCCGAAATCAACTTATACAAGCATGAGCCATGGGATTTGCCCGCATTATCAGTGGTAAAGTTCAGTGAAGAGTGGTTCTTCTTCACAGAGAATAGCAGAAAGTACAAGACAAGCGATCGAAGCAACAGACAAACAGAGAAGGGTTATTGGCATGAAACTTCCAAGGAAGTACCAGTGGTCAATACTAATGACAAGTCTAAAGTCATTGGCAGAAAACGATTTCTAGTATTCTACAAAGGTCGTGCTTCTCGTAAAGAAAAGACTAACTGGGTTATGCAGGAGTATTTTGTTCCTGAGGCTGAGCACGAGACGAACATAGTGCTTTGTCGCATAAAGCAGAAATCAGTGGGGAGTTCTCTTGAAGATAGTAACAAAGGTATTGTATTTGATATTGAGGGGACAGAGATGACTGCAACCTTGACGTTTCCAGAGGGCTTTAAGTTCCAACCATCAGAAGAGCGGCTGGTGGACCATTACTTACGGAAGAAGCTATTATTCCCGGAAATTGATTTATGTCAATATGAGCCTCATGAATTACCAGCATTATCATTGATAGAATCGAATAAAGAGTGGTTTTTCTTCAATCGGGGGAGAGGCAGAAGAACTAAACAAGGTTACTGGAAGAAAACTGGATCTGGCCGTAAAATAAAGGCTGAAGATAAGTCGATCATTGGTGAACTGAGGCACATGACATTCCATTGCTCTCCCAAAGGGCAGGTGACTGCATGGGTTATACACGAGTATTCTCTTCTTCCCAACCAGGGGGACATAGTATTGAGTCGGTTAAAGTTAAAGTCAGTTGACGATACTGGAATTACTTCTGATGATTTGGATATGGAGGACGTTCCAGAGCTACTTGATCAGCCAGAAGTAAATCTGGATTCACTCTTTCCTCCACTTGAGCCACAACAGGAGTGCCGCCCCTACGTACGGCAGTCACCATTATCCACAGAGCTGGGAAATGATCCAAACACCAATGTCTATTACAGTGAATGCAGTAAGTGGCAATGTGCATTAGGGACTGATGATTCATATCTTAGACATCTGAAAAGAATTTCAACCAATGATCATGAGAAACCAGTTAGACATGCTATGGCTAAGTTTCAAAATCGAGCTACAGCTCGTACGATTTTGGAGGTGCATCCTCAAACCGAAGATTCTGCAGAACTCGGTGATGCTCTGCATTATAATGAATGTAGTGAGCTTCAATCTCCATTTGTGGACAATGATTCATCTCTTACAGAGTTTTTGAATACATGTATTGCTGACCAGGATTATTACTCCTCTGAAGAATCAGCACTGATTCCTTCCAAAGACTCCAACCTAGCTACTAAAGTTATAAGGAAGGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

491

Amino Acids

56.91

Weight (kDa)

5.9

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 135 9.6e-31 No apical meristem (NAM) protein
NAM PF02365 183 - 290 4.6e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0361721 RchiOBHm_Chr1g0361731
rosa_laevigata RLG00000027707
rosa_roxburghii Rroxscaffold_4G00294740
rosa_rugosa Rorug01G0291100
rosa_samantha Rh1AG301500 Rh1BG264300 Rh1DG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1308, 1460
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 580
AciI CCGC 3 cut(s) 162, 580, 1039
AclWI GGATC 3 cut(s) 72, 760, 1079
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 77, 1173
AcuI CTGAAG 2 cut(s) 795, 1428
AfaI GTAC 4 cut(s) 224, 291, 1050, 1246
AfiI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
AflIII ACRYGT 1 cut(s) 1376
AgsI TTSAA 7 cut(s) 85, 482, 703, 1179, 1226, 1328, 1372
AjnI CCWGG 2 cut(s) 879, 1389
AluBI AGCT 8 cut(s) 70, 610, 973, 1075, 1235, 1241, 1324, 1448
AluI AGCT 8 cut(s) 70, 610, 973, 1075, 1235, 1241, 1324, 1448
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 72, 760, 1079
AoxI GGCC 1 cut(s) 757
ApoI RAATTY 2 cut(s) 77, 1173
Asp700I GAANNNNTTC 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 589
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 4 cut(s) 806, 850, 1050, 1304
AvaII GGWCC 1 cut(s) 589
AxyI CCTNAGG 1 cut(s) 414
BauI CACGAG 2 cut(s) 425, 857
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 2 cut(s) 92, 577
BceAI ACGGC 2 cut(s) 744, 1067
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 1262, 1296
BciT130I CCWGG 2 cut(s) 881, 1391
BclI TGATCA 2 cut(s) 979, 1186
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 344, 1445
BfmI CTRYAG 2 cut(s) 1236, 1281
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 2 cut(s) 581, 1039
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 2 cut(s) 582, 1040
Bme1390I CCNGG 3 cut(s) 620, 881, 1391
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 589
BmrFI CCNGG 3 cut(s) 620, 881, 1391
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 2 cut(s) 1270, 1285
BmuI ACTGGG 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 1040
BpuMI CCSGG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 1048
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 3 cut(s) 149, 282, 880
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
Bse1I ACTGG 6 cut(s) 293, 392, 743, 754, 934, 1199
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 817, 1133
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 2 cut(s) 881, 1391
BseDI CCNNGG 3 cut(s) 149, 282, 880
BseGI GGATG 1 cut(s) 1261
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
BseMI GCAATG 2 cut(s) 817, 1133
BseMII CTCAG 3 cut(s) 405, 411, 791
BseNI ACTGG 6 cut(s) 293, 392, 743, 754, 934, 1199
BseRI GAGGAG 1 cut(s) 1393
BseYI CCCAGC 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 620
BsiWI CGTACG 2 cut(s) 1048, 1244
BslFI GGGAC 3 cut(s) 532, 899, 1153
BslI CCNNNNNNNGG 4 cut(s) 61, 881, 882, 1050
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 3 cut(s) 532, 899, 1153
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 1 cut(s) 759
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 162, 580, 1039
BspANI GGCC 1 cut(s) 759
BspCNI CTCAG 3 cut(s) 406, 412, 792
BspHI TCATGA 2 cut(s) 649, 1189
BspMAI CTGCAG 1 cut(s) 1285
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 72, 760, 1079
BspQI GCTCTTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 817, 1133
BsrI ACTGG 6 cut(s) 293, 392, 743, 754, 934, 1199
BssECI CCNNGG 3 cut(s) 149, 282, 880
BssMI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
BssSI CACGAG 2 cut(s) 425, 857
BssT1I CCWWGG 2 cut(s) 149, 282
Bst2BI CACGAG 2 cut(s) 425, 857
Bst2UI CCWGG 2 cut(s) 881, 1391
Bst4CI ACNGT 1 cut(s) 1109
Bst6I CTCTTC 3 cut(s) 183, 570, 873
BstBAI YACGTR 1 cut(s) 1048
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 5 cut(s) 414, 420, 800, 1157, 1218
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 1261
BstKTI GATC 7 cut(s) 67, 238, 755, 789, 982, 1087, 1189
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 881, 1391
BstNSI RCATGY 2 cut(s) 1211, 1380
BstSCI CCNGG 3 cut(s) 618, 879, 1389
BstSFI CTRYAG 2 cut(s) 1236, 1281
BstSNI TACGTA 1 cut(s) 1048
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 752
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 1261
BtsIMutI CAGTG 6 cut(s) 177, 190, 300, 471, 1114, 1418
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 2 cut(s) 649, 1189
Cfr13I GGNCC 1 cut(s) 589
Csp6I GTAC 4 cut(s) 223, 290, 1049, 1245
CviAII CATG 9 cut(s) 143, 150, 272, 650, 808, 846, 1190, 1208, 1377
CviQI GTAC 4 cut(s) 223, 290, 1049, 1245
DdeI CTNAG 5 cut(s) 414, 420, 800, 1157, 1218
DpnI GATC 7 cut(s) 66, 237, 754, 788, 981, 1086, 1188
DpnII GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 183, 570, 873
EarI CTCTTC 3 cut(s) 183, 570, 873
Eco105I TACGTA 1 cut(s) 1048
Eco130I CCWWGG 2 cut(s) 149, 282
Eco47I GGWCC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 795, 1428
Eco81I CCTNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 879, 1389
EcoT14I CCWWGG 2 cut(s) 149, 282
ErhI CCWWGG 2 cut(s) 149, 282
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 9 cut(s) 146, 153, 275, 653, 811, 849, 1193, 1211, 1380
FaqI GGGAC 3 cut(s) 532, 899, 1153
FatI CATG 9 cut(s) 142, 149, 271, 649, 807, 845, 1189, 1207, 1376
FauI CCCGC 1 cut(s) 169
FbaI TGATCA 2 cut(s) 979, 1186
Fnu4HI GCNGC 2 cut(s) 581, 1039
FokI GGATG 1 cut(s) 1248
Fsp4HI GCNGC 2 cut(s) 581, 1039
FspBI CTAG 2 cut(s) 344, 1445
GluI GCNGC 2 cut(s) 581, 1039
GsaI CCCAGC 1 cut(s) 1079
HaeIII GGCC 1 cut(s) 759
HapII CCGG 1 cut(s) 620
Hin1II CATG 9 cut(s) 146, 153, 275, 653, 811, 849, 1193, 1211, 1380
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 9 cut(s) 677, 898, 1001, 1148, 1277, 1349, 1412, 1423, 1436
HpaII CCGG 1 cut(s) 620
HphI GGTGA 4 cut(s) 806, 850, 1050, 1304
Hpy166II GTNNAC 4 cut(s) 589, 797, 922, 1342
Hpy188I TCNGA 5 cut(s) 124, 574, 943, 1167, 1408
Hpy188III TCNNGA 7 cut(s) 413, 479, 548, 650, 968, 998, 1190
Hpy8I GTNNAC 4 cut(s) 589, 797, 922, 1342
HpyAV CCTTC 3 cut(s) 253, 1437, 1459
HpyCH4III ACNGT 1 cut(s) 1109
HpyCH4IV ACGT 3 cut(s) 542, 963, 1047
HpyCH4V TGCA 8 cut(s) 397, 533, 845, 1116, 1133, 1261, 1283, 1303
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 5 cut(s) 414, 420, 800, 1157, 1218
HpySE526I ACGT 3 cut(s) 542, 963, 1047
Hsp92II CATG 9 cut(s) 146, 153, 275, 653, 811, 849, 1193, 1211, 1380
Ksp22I TGATCA 2 cut(s) 979, 1186
Kzo9I GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
LguI GCTCTTC 1 cut(s) 570
LweI GCATC 2 cut(s) 1270, 1285
MaeI CTAG 2 cut(s) 344, 1445
MaeII ACGT 3 cut(s) 542, 963, 1047
MaeIII GTNAC 4 cut(s) 488, 734, 838, 1056
MalI GATC 7 cut(s) 66, 237, 754, 788, 981, 1086, 1188
MbiI CCGCTC 1 cut(s) 580
MboI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 5 cut(s) 77, 624, 653, 933, 1173
MlyI GAGTC 2 cut(s) 907, 1430
MmeI TCCRAC 2 cut(s) 589, 1464
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 3 cut(s) 558, 905, 911
MslI CAYNNNNRTG 1 cut(s) 1308
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 3 cut(s) 620, 881, 1391
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 2 cut(s) 881, 1391
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 149
NdeII GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
NlaIII CATG 9 cut(s) 146, 153, 275, 653, 811, 849, 1193, 1211, 1380
NmuCI GTSAC 2 cut(s) 838, 1056
NspI RCATGY 2 cut(s) 1211, 1380
PagI TCATGA 2 cut(s) 649, 1189
PaqCI CACCTGC 1 cut(s) 826
PciI ACATGT 1 cut(s) 1376
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 7 cut(s) 677, 1001, 1148, 1277, 1349, 1412, 1423
Pfl23II CGTACG 2 cut(s) 1048, 1244
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 2 cut(s) 582, 1040
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 906, 1430
PpsI GAGTC 2 cut(s) 906, 1430
Ppu21I YACGTR 1 cut(s) 1048
PscI ACATGT 1 cut(s) 1376
PsiI TTATAA 2 cut(s) 1308, 1460
Psp6I CCWGG 2 cut(s) 879, 1389
PspFI CCCAGC 1 cut(s) 1075
PspGI CCWGG 2 cut(s) 879, 1389
PspLI CGTACG 2 cut(s) 1048, 1244
PspPI GGNCC 1 cut(s) 589
PstI CTGCAG 1 cut(s) 1285
PsuI RGATCY 1 cut(s) 752
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 4 cut(s) 224, 291, 1050, 1246
RsaNI GTAC 4 cut(s) 223, 290, 1049, 1245
RseI CAYNNNNRTG 1 cut(s) 1308
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 558, 905, 911
SatI GCNGC 2 cut(s) 581, 1039
Sau3AI GATC 7 cut(s) 64, 235, 752, 786, 979, 1084, 1186
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 2 cut(s) 907, 1430
ScrFI CCNGG 3 cut(s) 620, 881, 1391
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 2 cut(s) 1270, 1285
SfcI CTRYAG 2 cut(s) 1236, 1281
SinI GGWCC 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 1308
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
SnaBI TACGTA 1 cut(s) 1048
Sse9I AATT 5 cut(s) 77, 624, 653, 933, 1173
SsiI CCGC 3 cut(s) 162, 580, 1039
SspMI CTAG 2 cut(s) 344, 1445
StyD4I CCNGG 3 cut(s) 618, 879, 1389
StyI CCWWGG 2 cut(s) 149, 282
TaaI ACNGT 1 cut(s) 1109
TaiI ACGT 3 cut(s) 545, 966, 1050
TaqI TCGA 4 cut(s) 238, 680, 785, 1231
TasI AATT 5 cut(s) 77, 624, 653, 933, 1173
TatI WGTACW 1 cut(s) 222
TauI GCSGC 2 cut(s) 583, 1041
TfiI GAWTC 7 cut(s) 677, 1001, 1148, 1277, 1349, 1412, 1423
Tru1I TTAA 3 cut(s) 558, 905, 911
Tru9I TTAA 3 cut(s) 558, 905, 911
TscAI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1425
TseFI GTSAC 2 cut(s) 838, 1056
Tsp45I GTSAC 2 cut(s) 838, 1056
TspDTI ATGAA 9 cut(s) 17, 59, 104, 106, 288, 666, 1140, 1326, 1341
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 6 cut(s) 177, 190, 300, 471, 1114, 1425
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 2 cut(s) 77, 1173
XceI RCATGY 2 cut(s) 1211, 1380
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 2 cut(s) 344, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.