Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Forward (+)

53624533 .. 53625408

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGCATGGCTGTCGTATTTCCAAAGGGTAGAATTTGGAGGACCATGGGAATCTCTCGTAATGGCAAGCTCTATATCTCCATTGAGGAAGTTTTGTATTTGGTTGAAATAGGGGCTTTGCTTCTCGTGGATGGTAGTGATACTAGTATTTCCTTGGAAGATATATATACAAAGGTTTCAGATGGAAAGAATAAGTTCTCGTTGGAGGAATTTAGAGCTTATAGGCAACTCAGATACCTTGGGTACATTGTTGCGAGACATGGTATTCCCTGGTCTAGTAAGGGTGTCAAGACTAACTGTGAATCTGTTTCTTCTCAAGTTTGCCCTGAAGCTGAAGAGATTAGGTTTGTCAATGGATTGTTCAATGGGATACAGATTAATGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

6.58

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_end_N2	PF12928	3 - 42	2.6e-10	tRNA-splicing endonuclease subunit sen54 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	33, 209
AcuI	CTGAAG	2 cut(s)	348, 354
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	107, 364
AhlI	ACTAGT	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	70, 218, 332
AluI	AGCT	3 cut(s)	70, 218, 332
Alw26I	GTCTC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	33, 209
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	125
BccI	CCATC	2 cut(s)	125, 176
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	250
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	2 cut(s)	144, 276
BfuI	GTATCC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	45, 153, 238, 269
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	45, 153, 238, 269
BseGI	GGATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	243
BssECI	CCNNGG	4 cut(s)	45, 153, 238, 269
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	3 cut(s)	45, 153, 238
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	7, 46, 260
CviJI	RGCY	5 cut(s)	11, 70, 116, 218, 332
CviKI_1	RGCY	5 cut(s)	11, 70, 116, 218, 332
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	3 cut(s)	45, 153, 238
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	348, 354
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	3 cut(s)	45, 153, 238
ErhI	CCWWGG	3 cut(s)	45, 153, 238
FaeI	CATG	3 cut(s)	10, 49, 263
FaiI	YATR	8 cut(s)	8, 47, 75, 164, 166, 168, 222, 261
FatI	CATG	3 cut(s)	6, 45, 259
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	2 cut(s)	144, 276
Hin1II	CATG	3 cut(s)	10, 49, 263
HinfI	GANTC	2 cut(s)	51, 302
Hpy188I	TCNGA	2 cut(s)	181, 233
Hpy188III	TCNNGA	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	10, 49, 263
LpnPI	CCDG	3 cut(s)	256, 283, 339
MaeI	CTAG	2 cut(s)	144, 276
MboII	GAAGA	3 cut(s)	170, 303, 347
MluCI	AATT	2 cut(s)	33, 209
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	33, 79, 199
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	3 cut(s)	10, 49, 263
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	51, 302
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	6 cut(s)	72, 177, 220, 240, 334, 347
SinI	GGWCC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	2 cut(s)	33, 209
SspMI	CTAG	2 cut(s)	144, 276
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	3 cut(s)	45, 153, 238
TaaI	ACNGT	1 cut(s)	299
TasI	AATT	2 cut(s)	33, 209
TfiI	GAWTC	2 cut(s)	51, 302
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	33, 209
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	144, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.