Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Reverse (-)

45525143 .. 45526486

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAATGAAGAATGTTTAGATGAAGAATATACCAATGACTATGATGAAGAAGAAGAGGAAAACCACTATGCTTCTCGTGCCATATCCAAGATGCAACCCAGGTCTAGTGTATCCAAGGCTTACTGGAATGATGAGATGGGCATGGCTGTCGTATTTCCAAAGGGTAAAATTTGGAGGACCATAGGAATCTCTCGTAATGGCAAGCTCTATATCTCCATTGAGGAAGTTTTGTATTTGGTTGAAATAGGGGCTTTGCTTCTCTTGGATGGTAGTGATACTAGTATTTCCTTGGAAGATAAATATACAAAGGTTTCAGATGGAAAGAATAAGTTCTTGTTGGAGGAATTTAGAGCTTATAGGCAACTCAGATACCTTGGGTACATTGTTGCGAGACATGGTATTCCCTGGTCTAGTAAGGGTGTCAAGACTAACTGTGAATCTGTTTCTTCTCAAGTTTGTCCTGAAGCTGAAGAGATTAGGTCTGTCAATGGATTCAATATAGTCTTGCTCATATTTCCAGGAAATTTCTATACTTGTCATCTTGAGGCCTCATTTTGTTTCTTCAAAAGCAGTATATTAGTTTTCATACTTGACCTTTTGGTTACTTGTCCCACACCCAGCAAGGAATGCTGTCCGCCTTTTTGGTCAAGTTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

219

Amino Acids

25.03

Weight (kDa)

4.96

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_end_N2	PF12928	30 - 87	7.9e-15	tRNA-splicing endonuclease subunit sen54 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	635
AcsI	RAATTY	3 cut(s)	168, 344, 523
AcuI	CTGAAG	2 cut(s)	483, 489
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	242, 496, 565
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	3 cut(s)	98, 404, 517
AluBI	AGCT	3 cut(s)	205, 353, 467
AluI	AGCT	3 cut(s)	205, 353, 467
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	546
ApoI	RAATTY	3 cut(s)	168, 344, 523
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	75
BccI	CCATC	3 cut(s)	130, 260, 311
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	3 cut(s)	100, 406, 519
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	105, 279, 411
BfuI	GTATCC	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	100, 406, 519
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	3 cut(s)	100, 406, 519
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	435, 563
BsaJI	CCNNGG	5 cut(s)	98, 114, 288, 373, 404
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	3 cut(s)	100, 406, 519
BseDI	CCNNGG	5 cut(s)	98, 114, 288, 373, 404
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	548
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	5 cut(s)	98, 114, 288, 373, 404
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	114, 288, 373
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	3 cut(s)	100, 406, 519
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	48, 465
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 627
BstNI	CCWGG	3 cut(s)	100, 406, 519
BstSCI	CCNGG	3 cut(s)	98, 404, 517
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	142, 395
CviJI	RGCY	7 cut(s)	119, 146, 205, 251, 353, 467, 548
CviKI_1	RGCY	7 cut(s)	119, 146, 205, 251, 353, 467, 548
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	48, 465
EarI	CTCTTC	2 cut(s)	48, 465
EciI	GGCGGA	1 cut(s)	624
Eco130I	CCWWGG	3 cut(s)	114, 288, 373
Eco147I	AGGCCT	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	483, 489
EcoRII	CCWGG	3 cut(s)	98, 404, 517
EcoT14I	CCWWGG	3 cut(s)	114, 288, 373
ErhI	CCWWGG	3 cut(s)	114, 288, 373
FaeI	CATG	2 cut(s)	145, 398
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	2 cut(s)	141, 394
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	3 cut(s)	105, 279, 411
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	145, 398
HinfI	GANTC	3 cut(s)	186, 437, 492
Hpy188I	TCNGA	2 cut(s)	316, 368
Hpy188III	TCNNGA	3 cut(s)	424, 461, 542
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 627
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	145, 398
LpnPI	CCDG	9 cut(s)	85, 109, 112, 391, 418, 474, 504, 531, 631
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	3 cut(s)	105, 279, 411
MaeIII	GTNAC	1 cut(s)	601
MboII	GAAGA	9 cut(s)	20, 35, 59, 62, 65, 305, 438, 482, 553
MluCI	AATT	4 cut(s)	168, 344, 523, 655
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	49, 168, 214, 334, 538, 559
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	654
MspR9I	CCNGG	3 cut(s)	100, 406, 519
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	3 cut(s)	100, 406, 519
MwoI	GCNNNNNNNGC	2 cut(s)	77, 627
NlaIII	CATG	2 cut(s)	145, 398
PceI	AGGCCT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	186, 437, 492
PfoI	TCCNGGA	1 cut(s)	517
Psp6I	CCWGG	3 cut(s)	98, 404, 517
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	98, 404, 517
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	654
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	3 cut(s)	100, 406, 519
SetI	ASST	8 cut(s)	104, 207, 312, 355, 375, 469, 482, 597
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	450, 542
SmoI	CTYRAG	2 cut(s)	450, 542
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	4 cut(s)	168, 344, 523, 655
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	3 cut(s)	105, 279, 411
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	98, 404, 517
StyI	CCWWGG	3 cut(s)	114, 288, 373
TaaI	ACNGT	1 cut(s)	434
TasI	AATT	4 cut(s)	168, 344, 523, 655
TfiI	GAWTC	3 cut(s)	186, 437, 492
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TspDTI	ATGAA	5 cut(s)	17, 21, 36, 60, 574
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	3 cut(s)	168, 344, 523
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	3 cut(s)	105, 279, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.