Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000206.1

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Reverse (-)

184223 .. 189633

Gene Structure 5411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000206.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgttgtggaggcatgttggcaaggccgggaaggtggcttcccgaacccatcaccaccgtccgattctccaaccatccggccacaacctctgctgcaacagccgatcactactccctaccgctttcacccacttcgccaagcgcttctcctccctctccccgcacgttgtcgccagtccgttaaccccctcaccgtcagctatcgtcatcgccgtcaaagacctcgatgtgcagaaacagattcattctgcaacaacatttttgggttttggcatagtctccattgaagacctcgactcgttctccagctcattccggggctcctcagaacctcttgacatagatgattttgaacagatgttgaatgacgatgagctctttttcaacactatggcagaggatggaaaagatgaggagatttactctcaatcttcacaggtagctgaaaaattaacgattatgaatgaagaatgtttagatgaagaatataccaatgactatgatgaagaagaagaggaaaaccactatgcttctcgtgccatatccaagatgcaacccaggaggtctagtgtatccaaggcttactgggatgatgagatgggcatggctgtcatatttccaaagggtagaatttggaggaccatgggaatctctcgtaatggcaagctctatatctccattaaggaagttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

5.26

Isoelectric Point (pI)

66.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 161
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	630
AfeI	AGCGCT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	287, 353, 364, 385
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	5 cut(s)	200, 309, 376, 443, 667
AluI	AGCT	5 cut(s)	200, 309, 376, 443, 667
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	143
AoxI	GGCC	2 cut(s)	24, 79
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	639
AsuC2I	CCSGG	2 cut(s)	28, 317
AsuHPI	GGTGA	3 cut(s)	44, 118, 183
AvaII	GGWCC	1 cut(s)	639
BanII	GRGCYC	2 cut(s)	323, 378
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	57, 82, 395, 592
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	2 cut(s)	28, 317
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	3 cut(s)	28, 317, 559
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	3 cut(s)	28, 317, 559
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	28, 317
BsaJI	CCNNGG	4 cut(s)	316, 557, 576, 642
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 553, 583
Bse1I	ACTGG	2 cut(s)	174, 590
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	4 cut(s)	316, 557, 576, 642
BseGI	GGATG	3 cut(s)	74, 406, 595
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	174, 590
BseRI	GAGGAG	3 cut(s)	139, 313, 428
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	26, 81
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	27, 78, 316
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	26, 81
Bsp1286I	GDGCHC	2 cut(s)	323, 378
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	2 cut(s)	120, 161
BspANI	GGCC	2 cut(s)	26, 81
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	174, 590
BssECI	CCNNGG	4 cut(s)	316, 557, 576, 642
BssMI	GATC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	576, 642
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	2 cut(s)	59, 195
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	1 cut(s)	325
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	3 cut(s)	74, 406, 595
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 536
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	26, 315, 557
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	26, 81
BtgI	CCRYGG	1 cut(s)	642
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	74, 406, 595
Cac8I	GCNNGC	1 cut(s)	665
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	639
CviAII	CATG	3 cut(s)	14, 604, 643
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	576, 642
Eco24I	GRGCYC	2 cut(s)	323, 378
Eco47I	GGWCC	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	576, 642
EcoT38I	GRGCYC	2 cut(s)	323, 378
ErhI	CCWWGG	2 cut(s)	576, 642
FaeI	CATG	3 cut(s)	17, 607, 646
FatI	CATG	3 cut(s)	13, 603, 642
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	3 cut(s)	61, 413, 602
FriOI	GRGCYC	2 cut(s)	323, 378
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	26, 81
HapII	CCGG	3 cut(s)	27, 78, 316
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	17, 607, 646
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	64, 241, 296, 648
HpaI	GTTAAC	1 cut(s)	183
HpaII	CCGG	3 cut(s)	27, 78, 316
HphI	GGTGA	3 cut(s)	44, 118, 183
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	63, 328
Hpy188III	TCNNGA	2 cut(s)	42, 335
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	59, 195
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	96, 232, 251, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 536
HpyF3I	CTNAG	1 cut(s)	325
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	17, 607, 646
HspAI	GCGC	1 cut(s)	142
KspAI	GTTAAC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	40, 91, 187, 319, 329, 422, 544, 571, 571
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	165
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	7 cut(s)	299, 423, 479, 494, 518, 521, 524
MhlI	GDGCHC	2 cut(s)	323, 378
MluCI	AATT	2 cut(s)	449, 630
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	94
MseI	TTAA	3 cut(s)	182, 452, 681
MspI	CCGG	3 cut(s)	27, 78, 316
MspR9I	CCNGG	3 cut(s)	28, 317, 559
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	2 cut(s)	99, 536
NciI	CCSGG	2 cut(s)	28, 317
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	17, 607, 646
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	3 cut(s)	64, 241, 648
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	182, 452, 681
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	639
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	28, 317, 559
SduI	GDGCHC	2 cut(s)	323, 378
SfaNI	GCATC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	2 cut(s)	449, 630
SsiI	CCGC	2 cut(s)	120, 161
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	26, 315, 557
StyI	CCWWGG	2 cut(s)	576, 642
TaaI	ACNGT	2 cut(s)	59, 195
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	225, 294
TasI	AATT	2 cut(s)	449, 630
TfiI	GAWTC	3 cut(s)	64, 241, 648
Tru1I	TTAA	3 cut(s)	182, 452, 681
Tru9I	TTAA	3 cut(s)	182, 452, 681
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	5 cut(s)	233, 476, 480, 495, 519
TspGWI	ACGGA	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	630
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.