Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002063.1

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Forward (+)

27734 .. 29759

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002063.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgaacggtgtgggttttcgattacctccaaatgtcccgctgatatggtcgagctccatggccttgtccaccagagtcttcgccgcaaacggaagcaccgatgtggtcgatctcggctttaagttccggtgcggacctcgtcaacgtcggaggtacattccggttccgatttactctcaatcttcacaggtagctgaaaaattaacgattatgaatgaagaatgtttagatgaagaatataccaatgactatgatgaagaagaagaggaaaaccactatgcttctcgtgccatatccaagatgcaacccaggaggtctagtgtatccaaggcttactgggatgatgagatgggcatggttgtcgtatttccaaagggggctttgcttctcttggatggtagtgatactagtatttccttggaagatatatatacaaaggtttcaaatggaaagaataagttcctgttggaggaatttagagcttatcggcaactcagataccttgggtacattgttgcgagacatggtattccctggtctagtaagggtgtcaagactaactgtgaatctgtttcttctcaagtttgtcctgaagctgaagagattaggtctgtcaatggattgttcaatgggatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

212

Amino Acids

23.99

Weight (kDa)

5.56

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 84, 132
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	612, 618
AfaI	GTAC	2 cut(s)	155, 509
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	444, 628
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	308, 533
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	4 cut(s)	54, 194, 482, 596
AluI	AGCT	4 cut(s)	54, 194, 482, 596
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	514
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	2 cut(s)	343, 389
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	2 cut(s)	310, 535
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	514
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	3 cut(s)	318, 408, 540
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	310, 535
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	310, 535
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	6 cut(s)	57, 308, 327, 417, 502, 533
BsaWI	WCCGGW	2 cut(s)	126, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	310, 535
BseDI	CCNNGG	6 cut(s)	57, 308, 327, 417, 502, 533
BseGI	GGATG	2 cut(s)	346, 400
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	127, 161
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	3 cut(s)	38, 84, 132
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	6 cut(s)	57, 308, 327, 417, 502, 533
BssMI	GATC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	4 cut(s)	57, 327, 417, 502
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	310, 535
Bst4CI	ACNGT	2 cut(s)	8, 563
Bst6I	CTCTTC	2 cut(s)	258, 594
BstDEI	CTNAG	1 cut(s)	494
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	346, 400
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	310, 535
BstSCI	CCNGG	2 cut(s)	308, 533
BstV2I	GAAGAC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	346, 400
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	154, 508
CviAII	CATG	3 cut(s)	58, 355, 524
CviJI	RGCY	8 cut(s)	54, 62, 117, 194, 332, 380, 482, 596
CviKI_1	RGCY	8 cut(s)	54, 62, 117, 194, 332, 380, 482, 596
CviQI	GTAC	2 cut(s)	154, 508
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	258, 594
EarI	CTCTTC	2 cut(s)	258, 594
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	4 cut(s)	57, 327, 417, 502
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	612, 618
EcoICRI	GAGCTC	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	308, 533
EcoT14I	CCWWGG	4 cut(s)	57, 327, 417, 502
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	4 cut(s)	57, 327, 417, 502
FaeI	CATG	3 cut(s)	61, 358, 527
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	57, 354, 523
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	353, 407
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	3 cut(s)	318, 408, 540
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	127, 161
Hin1II	CATG	3 cut(s)	61, 358, 527
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	2 cut(s)	75, 566
HpaII	CCGG	2 cut(s)	127, 161
Hpy166II	GTNNAC	2 cut(s)	69, 143
Hpy188I	TCNGA	3 cut(s)	150, 168, 497
Hpy188III	TCNNGA	2 cut(s)	553, 590
Hpy8I	GTNNAC	2 cut(s)	69, 143
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	8, 563
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	61, 358, 527
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	59
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	3 cut(s)	318, 408, 540
MaeII	ACGT	1 cut(s)	145
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	200, 473
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	128, 447
MnlI	CCTC	6 cut(s)	36, 144, 147, 259, 306, 463
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	120, 203
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	2 cut(s)	127, 161
MspR9I	CCNGG	2 cut(s)	310, 535
MvaI	CCWGG	2 cut(s)	310, 535
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	61, 358, 527
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	308, 533
PspGI	CCWGG	2 cut(s)	308, 533
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	138
RsaI	GTAC	2 cut(s)	155, 509
RsaNI	GTAC	2 cut(s)	154, 508
RseI	CAYNNNNRTG	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	120, 203
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	310, 535
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	2 cut(s)	200, 473
SsiI	CCGC	3 cut(s)	38, 84, 132
SspMI	CTAG	3 cut(s)	318, 408, 540
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	308, 533
StyI	CCWWGG	4 cut(s)	57, 327, 417, 502
TaaI	ACNGT	2 cut(s)	8, 563
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	19, 50, 108
TasI	AATT	2 cut(s)	200, 473
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	120, 203
Tru9I	TTAA	2 cut(s)	120, 203
TspDTI	ATGAA	5 cut(s)	17, 227, 231, 246, 270
TspGWI	ACGGA	1 cut(s)	105
Tth111I	GACNNNGTC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	3 cut(s)	318, 408, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.