Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Forward (+)

37454253 .. 37455404

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAATGAAGAATGTTTAGATGAAGAATATACCAATGACTATGATGAAGAAGAAGAGGAAAACCACTATGCTTCTCGTGCCATATCCAAGATGCAACCCAGGTCTAGTGTATCCAAGGCTTACTGGGATGATGAGATGGGCATGGCTGTCATATTTCCAAAGGGTAGAATTTGGAGGACCATGGGAATCTCTCGTAATGGCAAGCTCTATATCTCCATTAAGGAAGTTTTGTATTTGGTTGAAATAGGGGCTTTGCTTCTCTTGGATGGTAGTGATACTAGTATTTCCTTGGAAGATATATATACAAAGGTTTCAGATGGAAAGAATAAGTTCTTGTTGGAGGAATTTAGAGCTTATAGGCAACTCAGATACCTTGGGTACATTGTTGCGAGACATGGTATTCCCTGGTCTAGTAAGGGTGTCAAGACTAACTGTGAATCTGTTTCTTCTCAAGTTTGTCCTGAAGCTGAAGAGATTAGGTCTGTCAATGGATTGCTCAATGGGATACAGATTAATGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

174

Amino Acids

19.88

Weight (kDa)

4.82

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_end_N2	PF12928	30 - 87	7.4e-14	tRNA-splicing endonuclease subunit sen54 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	168, 344
AcuI	CTGAAG	2 cut(s)	483, 489
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	98, 404
AluBI	AGCT	3 cut(s)	205, 353, 467
AluI	AGCT	3 cut(s)	205, 353, 467
Alw26I	GTCTC	1 cut(s)	385
ApoI	RAATTY	2 cut(s)	168, 344
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	75
BccI	CCATC	3 cut(s)	130, 260, 311
BciT130I	CCWGG	2 cut(s)	100, 406
BciVI	GTATCC	2 cut(s)	121, 498
BcoDI	GTCTC	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	105, 279, 411
BfuI	GTATCC	2 cut(s)	121, 498
Bme1390I	CCNGG	2 cut(s)	100, 406
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	100, 406
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	435
BsaJI	CCNNGG	6 cut(s)	98, 114, 180, 288, 373, 404
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	100, 406
BseDI	CCNNGG	6 cut(s)	98, 114, 180, 288, 373, 404
BseGI	GGATG	2 cut(s)	133, 271
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	385
Bsp19I	CCATGG	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	98, 114, 180, 288, 373, 404
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	4 cut(s)	114, 180, 288, 373
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	100, 406
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	48, 465
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	133, 271
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	100, 406
BstSCI	CCNGG	2 cut(s)	98, 404
BsuI	GTATCC	2 cut(s)	121, 498
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	133, 271
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	142, 181, 395
CviJI	RGCY	6 cut(s)	119, 146, 205, 251, 353, 467
CviKI_1	RGCY	6 cut(s)	119, 146, 205, 251, 353, 467
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	48, 465
EarI	CTCTTC	2 cut(s)	48, 465
Eco130I	CCWWGG	4 cut(s)	114, 180, 288, 373
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	483, 489
EcoRII	CCWGG	2 cut(s)	98, 404
EcoT14I	CCWWGG	4 cut(s)	114, 180, 288, 373
ErhI	CCWWGG	4 cut(s)	114, 180, 288, 373
FaeI	CATG	3 cut(s)	145, 184, 398
FatI	CATG	3 cut(s)	141, 180, 394
FokI	GGATG	2 cut(s)	140, 278
FspBI	CTAG	3 cut(s)	105, 279, 411
Hin1II	CATG	3 cut(s)	145, 184, 398
HinfI	GANTC	2 cut(s)	186, 437
Hpy188I	TCNGA	2 cut(s)	316, 368
Hpy188III	TCNNGA	2 cut(s)	424, 461
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	145, 184, 398
LpnPI	CCDG	6 cut(s)	85, 109, 112, 391, 418, 474
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	3 cut(s)	105, 279, 411
MboII	GAAGA	8 cut(s)	20, 35, 59, 62, 65, 305, 438, 482
MluCI	AATT	2 cut(s)	168, 344
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	49, 168, 334
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	219, 513
MspR9I	CCNGG	2 cut(s)	100, 406
MvaI	CCWGG	2 cut(s)	100, 406
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	180
NlaIII	CATG	3 cut(s)	145, 184, 398
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	186, 437
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	98, 404
PspGI	CCWGG	2 cut(s)	98, 404
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	219, 513
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	100, 406
SetI	ASST	7 cut(s)	104, 207, 312, 355, 375, 469, 482
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	2 cut(s)	168, 344
SspMI	CTAG	3 cut(s)	105, 279, 411
StyD4I	CCNGG	2 cut(s)	98, 404
StyI	CCWWGG	4 cut(s)	114, 180, 288, 373
TaaI	ACNGT	1 cut(s)	434
TasI	AATT	2 cut(s)	168, 344
TfiI	GAWTC	2 cut(s)	186, 437
Tru1I	TTAA	2 cut(s)	219, 513
Tru9I	TTAA	2 cut(s)	219, 513
TspDTI	ATGAA	4 cut(s)	17, 21, 36, 60
VpaK11BI	GGWCC	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	2 cut(s)	168, 344
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	3 cut(s)	105, 279, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.