Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0017770

Physical Location & Seq

Genomic Coordinates Reverse (-)

191844 .. 193941

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgaatgaagaatgtttagatgaagaatataccaatgactatgatgaagaagaagaggaaaaccactatgtttctcatgccatatccaagatgcaacccaggaggtctagtgtatccaaggcttactgggatgatgagatgggcatggttgtcgtatttccaaagggggctttgcttctcttggatggtagtgatactagtatttccttggaagatatatatacaaaggtttcaaatggaaagaataagttcctgttggaggaatttagagcttatcggcaactcagataccttgggtacattgttgcgagacatggtattccctggtctagtaagggtgtcaagactaactgtgaatctgtttcttctcaagtttgtcctgaagctgaagagattagtaatggagatagggcttcaaatacaaatgcagtagaatctactggaaaagaaaaggagagatttgatctacaaaaagcacttttggctgctcttttcaatgctcctgagagacccaaggagccggagctagaaagacctcaggagccggagctaccaaaaaaaaaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

189

Amino Acids

21.58

Weight (kDa)

4.87

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017770)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361791
rosa_multiflora	Rmu_sc0000206.1_g000034 Rmu_sc0001861.1_g000057 Rmu_sc0002063.1_g000008
rosa_rugosa	Rorug03G0189800 Rorug04G0209300
rosa_samantha	Rh4BG023500 Rh5AG503400 Rh5BG538100 Rh5CG562000
rosa_wichuraiana	Rw1G021270 Rw6G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	402, 408
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	234, 417, 496
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	98, 323
AluBI	AGCT	4 cut(s)	272, 386, 526, 550
AluI	AGCT	4 cut(s)	272, 386, 526, 550
Alw26I	GTCTC	2 cut(s)	304, 502
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	133, 179
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	100, 325
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	304, 502
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	4 cut(s)	108, 198, 330, 527
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	100, 325
BmiI	GGNNCC	2 cut(s)	519, 543
BmrFI	CCNGG	2 cut(s)	100, 325
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	6 cut(s)	98, 117, 207, 292, 323, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	131, 445
Bse21I	CCTNAGG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	100, 325
BseDI	CCNNGG	6 cut(s)	98, 117, 207, 292, 323, 513
BseGI	GGATG	2 cut(s)	136, 190
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	3 cut(s)	298, 495, 551
BseNI	ACTGG	2 cut(s)	131, 445
BseXI	GCAGC	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	521, 545
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	304, 502
Bso31I	GGTCTC	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	297, 496, 550
BspLI	GGNNCC	2 cut(s)	519, 543
BspTNI	GGTCTC	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	131, 445
BssECI	CCNNGG	6 cut(s)	98, 117, 207, 292, 323, 513
BssMI	GATC	1 cut(s)	463
BssT1I	CCWWGG	4 cut(s)	117, 207, 292, 513
Bst2UI	CCWGG	2 cut(s)	100, 325
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	48, 384
BstDEI	CTNAG	3 cut(s)	284, 504, 537
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	136, 190
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	304, 502
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	100, 325
BstSCI	CCNGG	2 cut(s)	98, 323
BstV1I	GCAGC	1 cut(s)	472
Bsu36I	CCTNAGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	136, 190
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	3 cut(s)	77, 145, 314
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	284, 504, 537
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	48, 384
EarI	CTCTTC	2 cut(s)	48, 384
Eco130I	CCWWGG	4 cut(s)	117, 207, 292, 513
Eco31I	GGTCTC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	402, 408
Eco81I	CCTNAGG	1 cut(s)	537
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	98, 323
EcoT14I	CCWWGG	4 cut(s)	117, 207, 292, 513
ErhI	CCWWGG	4 cut(s)	117, 207, 292, 513
FaeI	CATG	3 cut(s)	80, 148, 317
FatI	CATG	3 cut(s)	76, 144, 313
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	2 cut(s)	143, 197
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	4 cut(s)	108, 198, 330, 527
GluI	GCNGC	1 cut(s)	486
HapII	CCGG	2 cut(s)	521, 545
Hin1II	CATG	3 cut(s)	80, 148, 317
HinfI	GANTC	2 cut(s)	356, 434
HpaII	CCGG	2 cut(s)	521, 545
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	4 cut(s)	343, 380, 503, 539
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	2 cut(s)	94, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	284, 504, 537
Hsp92II	CATG	3 cut(s)	80, 148, 317
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	5 cut(s)	505, 517, 523, 541, 547
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	4 cut(s)	108, 198, 330, 527
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	8 cut(s)	20, 35, 59, 62, 65, 224, 357, 401
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	49, 96, 253, 546
MroXI	GAANNNNTTC	1 cut(s)	248
MspI	CCGG	2 cut(s)	521, 545
MspR9I	CCNGG	2 cut(s)	100, 325
MvaI	CCWGG	2 cut(s)	100, 325
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	80, 148, 317
NlaIV	GGNNCC	2 cut(s)	519, 543
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	356, 434
PkrI	GCNGC	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	98, 323
PspGI	CCWGG	2 cut(s)	98, 323
PspN4I	GGNNCC	2 cut(s)	519, 543
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	100, 325
SetI	ASST	8 cut(s)	107, 231, 274, 294, 388, 528, 538, 552
SfaNI	GCATC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	4 cut(s)	108, 198, 330, 527
StyD4I	CCNGG	2 cut(s)	98, 323
StyI	CCWWGG	4 cut(s)	117, 207, 292, 513
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	356, 434
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	4 cut(s)	17, 21, 36, 60
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	4 cut(s)	108, 198, 330, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.