Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Forward (+)

64978802 .. 64979732

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTCGTCGCAACATGCCACAAACTCCACAACCCCAGTCATCCTCATCTTCTTCTTTATATCAAGATCGATGAGCAAGGCAAAGTTGCATTAATCCCTTACATTACTGCTGGTGATCCTGATCTATCTGTCACCGCAGAAACATTGAAGGCACTGGATTCTTGTGGATCAGACATAATTGAATTAGGAGTGCCCTACTCTGATCCATTAGCAGATGGGCCAGTTACACAGGCTGCAGCCACTCGTTATTTGGCAAGAGGGACCAATTTGAATGCAATCTTGGCAATGTTGAAGGAGGTGATTCCCAAATTGTCTTGCCCAATTGCTCACTTTACATACTACAATCCTATTTTGAAGCGTGGTGTTGGAGAGTTCATGTGCACCATTAAATTAAAGATGTCGGTGTACATGGACTTGTGGTTCCAGATGTTCCATTGGAAGAGAGACATTCTGCGAAAGGAAGCCATGAAAAATAATATTGAACTGGTATTACTGACTACACCCACCACTCCAATGGAGCGAATGAAGGCCATTGCCGATGCTTCCGAAGGGTTTTTGTACCTGGTGAGCTCAATTGGAGTTACGGGGGTCCGGGCATCCGTGAATGAACGAGTTCCTGCCCTTTTGAAAGTAATTAAGGAGGCTACTTCAAAGGCTGTAGCTGTTGGTTTTGGCATCTTAAAGCCTGAACAAGCTAAACAGGTAGCAGGGTGGGGAGCTGATGGTGTCATTGTTGGTATCGCAATGGTGAAGCTGTTGGGTGAAGCTAAAACTCCTGAGGAAGGGTTGAAGGGACTGGAAATTTTCACCGGTCTTTTTTTTTTGTTTTTTGGGTCAAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

281

Amino Acids

30.64

Weight (kDa)

8.24

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	24 - 267	8.4e-72	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	3 cut(s)	110, 175, 197
AcsI	RAATTY	1 cut(s)	801
AfaI	GTAC	2 cut(s)	407, 560
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgeI	ACCGGT	1 cut(s)	809
AgsI	TTSAA	9 cut(s)	148, 182, 271, 292, 355, 482, 628, 651, 790
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	6 cut(s)	570, 662, 695, 719, 754, 767
AluI	AGCT	6 cut(s)	570, 662, 695, 719, 754, 767
Alw21I	GWGCWC	2 cut(s)	383, 572
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	379
AlwI	GGATC	3 cut(s)	110, 175, 197
AoxI	GGCC	2 cut(s)	218, 528
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	801
AseI	ATTAAT	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	3 cut(s)	218, 261, 589
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	7 cut(s)	124, 125, 310, 577, 760, 773, 799
AvaII	GGWCC	2 cut(s)	261, 589
AxyI	CCTNAGG	1 cut(s)	777
BaeGI	GKGCMC	2 cut(s)	195, 383
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	2 cut(s)	383, 572
BbvI	GCAGC	2 cut(s)	220, 248
BccI	CCATC	2 cut(s)	209, 716
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	438
BfmI	CTRYAG	2 cut(s)	234, 657
BisI	GCNGC	2 cut(s)	234, 237
BlsI	GCNGC	2 cut(s)	235, 238
Bme1390I	CCNGG	2 cut(s)	563, 593
Bme18I	GGWCC	2 cut(s)	261, 589
BmgT120I	GGNCC	3 cut(s)	218, 261, 589
BmiI	GGNNCC	3 cut(s)	262, 422, 590
BmrFI	CCNGG	2 cut(s)	563, 593
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	529, 605, 684
BmuI	ACTGGG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse118I	RCCGGY	1 cut(s)	809
Bse1I	ACTGG	5 cut(s)	36, 159, 221, 489, 801
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	3 cut(s)	291, 531, 750
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	2 cut(s)	40, 596
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMI	GCAATG	3 cut(s)	291, 531, 750
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	5 cut(s)	36, 159, 221, 489, 801
BseSI	GKGCMC	2 cut(s)	195, 383
BseXI	GCAGC	2 cut(s)	220, 248
BshFI	GGCC	2 cut(s)	220, 530
BshTI	ACCGGT	1 cut(s)	809
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	383, 572
BsiSI	CCGG	2 cut(s)	592, 810
BslFI	GGGAC	2 cut(s)	274, 807
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	274, 807
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	220, 530
Bsp1286I	GDGCHC	3 cut(s)	195, 383, 572
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	5 cut(s)	66, 115, 121, 167, 202
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	220, 530
BspCNI	CTCAG	1 cut(s)	769
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	262, 422, 590
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	110, 175, 197
BsrDI	GCAATG	3 cut(s)	291, 531, 750
BsrFI	RCCGGY	1 cut(s)	809
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	5 cut(s)	36, 159, 221, 489, 801
BssAI	RCCGGY	1 cut(s)	809
BssMI	GATC	5 cut(s)	66, 115, 121, 167, 202
Bst2UI	CCWGG	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	777
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	40, 596
BstKTI	GATC	5 cut(s)	69, 118, 124, 170, 205
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	5 cut(s)	66, 115, 121, 167, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	561, 591
BstSFI	CTRYAG	2 cut(s)	234, 657
BstSLI	GKGCMC	2 cut(s)	195, 383
BstV1I	GCAGC	2 cut(s)	220, 248
BstXI	CCANNNNNNTGG	1 cut(s)	514
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	220, 530
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	40, 596
BtsIMutI	CAGTG	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	809
Cfr13I	GGNCC	3 cut(s)	218, 261, 589
ClaI	ATCGAT	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	406, 559
CspAI	ACCGGT	1 cut(s)	809
CviAII	CATG	4 cut(s)	15, 376, 409, 466
CviQI	GTAC	2 cut(s)	406, 559
DdeI	CTNAG	1 cut(s)	777
DpnI	GATC	5 cut(s)	68, 117, 123, 169, 204
DpnII	GATC	5 cut(s)	66, 115, 121, 167, 202
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	261, 589
Eco53kI	GAGCTC	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	777
EcoICRI	GAGCTC	1 cut(s)	570
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	572
FaeI	CATG	4 cut(s)	18, 379, 412, 469
FaiI	YATR	7 cut(s)	16, 60, 176, 337, 377, 410, 467
FaqI	GGGAC	2 cut(s)	274, 807
FatI	CATG	4 cut(s)	14, 375, 408, 465
Fnu4HI	GCNGC	2 cut(s)	234, 237
FokI	GGATG	2 cut(s)	27, 583
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	2 cut(s)	234, 237
GluI	GCNGC	2 cut(s)	234, 237
HaeIII	GGCC	2 cut(s)	220, 530
HapII	CCGG	2 cut(s)	592, 810
Hin1II	CATG	4 cut(s)	18, 379, 412, 469
HinfI	GANTC	2 cut(s)	158, 301
HpaII	CCGG	2 cut(s)	592, 810
HphI	GGTGA	7 cut(s)	124, 125, 310, 577, 760, 773, 799
Hpy166II	GTNNAC	2 cut(s)	381, 406
Hpy188I	TCNGA	3 cut(s)	172, 202, 547
Hpy188III	TCNNGA	4 cut(s)	64, 119, 424, 776
Hpy8I	GTNNAC	2 cut(s)	381, 406
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	142, 286, 520, 542, 776, 784
HpyCH4V	TGCA	4 cut(s)	89, 236, 275, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	777
Hsp92II	CATG	4 cut(s)	18, 379, 412, 469
Kzo9I	GATC	5 cut(s)	66, 115, 121, 167, 202
LmnI	GCTCC	2 cut(s)	517, 716
Lsp1109I	GCAGC	2 cut(s)	220, 248
LweI	GCATC	3 cut(s)	529, 605, 684
MabI	ACCWGGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	130, 223, 580
MalI	GATC	5 cut(s)	68, 117, 123, 169, 204
MboI	GATC	5 cut(s)	66, 115, 121, 167, 202
MboII	GAAGA	3 cut(s)	41, 44, 451
MfeI	CAATTG	2 cut(s)	321, 573
MhlI	GDGCHC	3 cut(s)	195, 383, 572
MluCI	AATT	9 cut(s)	177, 182, 265, 308, 321, 389, 573, 633, 801
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	54, 251, 289, 634, 772
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	6 cut(s)	92, 387, 392, 636, 680, 844
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	2 cut(s)	592, 810
MspR9I	CCNGG	2 cut(s)	563, 593
MunI	CAATTG	2 cut(s)	321, 573
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	5 cut(s)	66, 115, 121, 167, 202
NlaIII	CATG	4 cut(s)	18, 379, 412, 469
NlaIV	GGNNCC	3 cut(s)	262, 422, 590
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	18
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	158, 301
PinAI	ACCGGT	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	235, 238
PshBI	ATTAAT	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	262, 422, 590
PspPI	GGNCC	3 cut(s)	218, 261, 589
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstI	CTGCAG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	407, 560
RsaNI	GTAC	2 cut(s)	406, 559
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	572
SaqAI	TTAA	6 cut(s)	92, 387, 392, 636, 680, 844
SatI	GCNGC	2 cut(s)	234, 237
Sau3AI	GATC	5 cut(s)	66, 115, 121, 167, 202
Sau96I	GGNCC	3 cut(s)	218, 261, 589
ScrFI	CCNGG	2 cut(s)	563, 593
SduI	GDGCHC	3 cut(s)	195, 383, 572
SetI	ASST	9 cut(s)	300, 564, 572, 664, 697, 705, 721, 756, 769
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	3 cut(s)	529, 605, 684
SfcI	CTRYAG	2 cut(s)	234, 657
SinI	GGWCC	2 cut(s)	261, 589
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	9 cut(s)	177, 182, 265, 308, 321, 389, 573, 633, 801
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	478
SstI	GAGCTC	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	561, 591
TaqI	TCGA	1 cut(s)	69
TasI	AATT	9 cut(s)	177, 182, 265, 308, 321, 389, 573, 633, 801
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	158, 301
Tru1I	TTAA	6 cut(s)	92, 387, 392, 636, 680, 844
Tru9I	TTAA	6 cut(s)	92, 387, 392, 636, 680, 844
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	4 cut(s)	364, 482, 539, 621
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	261, 589
VspI	ATTAAT	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	801
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 511
XmnI	GAANNNNTTC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.