Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008712.1

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Reverse (-)

54871 .. 55859

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008712.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgttgaaggaggtgattcccaaattgtcttgcccaattgctcactttacatactacaatcctattttgaagagtggtgttggagagttcatgtgcaccattaaattaaagatgtcggtgtacatggacttgtggttccagatgttccattggaagagagacattctgcgaaaggaagccatgaaaaataatattgaactggtattactgactacacccaccactccaatggagcgaatgaaggccattgctgatgcttccgaagggtttttgtacctggtgagctcaattggagttacgggggtccgggcatctgtgaatgaacgagttcctgcccttttgaaagtaattaaggaggctacgtcaaaggctgtagctgttggttttggcatcttaaagcctgaacaagctaaacaggtagcggggtggggagctgatggtgtcattgttggtatcgcaatggtgaagctgttgggtgaagctaaaactcctgaggaagggagaccagcagccatggctgctaacctccaagttgcagagggagtaacatcagccaacgcttcacttccggatgccaagggtttgtccaccatccttctccatacccgaacagtctgcaaaagaaggataaaggtaccaaaagacataagatcggccgtcgtgggggtggagaccaccgagcaacacaacgccactggtccggcaacatccacaagcatcggtagagtatcggttcggcagctattctcaggcgtagagttaggtatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

256

Amino Acids

27.66

Weight (kDa)

9.58

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	654
AfaI	GTAC	3 cut(s)	122, 275, 636
AfiI	CCNNNNNNNGG	2 cut(s)	497, 663
AgsI	TTSAA	4 cut(s)	7, 70, 197, 343
AjnI	CCWGG	1 cut(s)	276
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	285, 377, 410, 434, 469, 482, 742
AluI	AGCT	7 cut(s)	285, 377, 410, 434, 469, 482, 742
Alw21I	GWGCWC	2 cut(s)	98, 287
Alw26I	GTCTC	3 cut(s)	153, 496, 665
Alw44I	GTGCAC	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	2 cut(s)	243, 654
ApaLI	GTGCAC	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	509, 518, 739
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	634
AspS9I	GGNCC	2 cut(s)	304, 698
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	25, 292, 475, 488
AvaII	GGWCC	2 cut(s)	304, 698
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	2 cut(s)	98, 287
BbvI	GCAGC	3 cut(s)	505, 521, 751
BccI	CCATC	2 cut(s)	431, 599
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	153, 496, 665
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	3 cut(s)	510, 519, 740
BlsI	GCNGC	3 cut(s)	511, 520, 741
Bme1390I	CCNGG	2 cut(s)	278, 308
Bme18I	GGWCC	2 cut(s)	304, 698
BmgT120I	GGNCC	2 cut(s)	304, 698
BmiI	GGNNCC	3 cut(s)	137, 305, 636
BmrFI	CCNGG	2 cut(s)	278, 308
BmsI	GCATC	5 cut(s)	244, 320, 399, 562, 726
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	2 cut(s)	496, 665
BsaJI	CCNNGG	2 cut(s)	513, 576
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 663
Bse1I	ACTGG	2 cut(s)	204, 700
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	2 cut(s)	246, 465
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	513, 576
BseGI	GGATG	3 cut(s)	577, 591, 707
BseLI	CCNNNNNNNGG	2 cut(s)	497, 663
BseMI	GCAATG	2 cut(s)	246, 465
BseMII	CTCAG	2 cut(s)	483, 762
BseNI	ACTGG	2 cut(s)	204, 700
BseSI	GKGCMC	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	505, 521, 751
Bsh1285I	CGRYCG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	245, 656
BshNI	GGYRCC	1 cut(s)	634
BsiEI	CGRYCG	1 cut(s)	657
BsiHKAI	GWGCWC	2 cut(s)	98, 287
BsiSI	CCGG	3 cut(s)	307, 569, 701
BslI	CCNNNNNNNGG	2 cut(s)	497, 663
BsmAI	GTCTC	3 cut(s)	153, 496, 665
BsnI	GGCC	2 cut(s)	245, 656
Bso31I	GGTCTC	2 cut(s)	496, 665
Bsp1286I	GDGCHC	2 cut(s)	98, 287
Bsp13I	TCCGGA	1 cut(s)	568
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	650
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	245, 656
BspCNI	CTCAG	2 cut(s)	484, 761
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	3 cut(s)	137, 305, 636
BspT107I	GGYRCC	1 cut(s)	634
BspTNI	GGTCTC	2 cut(s)	496, 665
BsrDI	GCAATG	2 cut(s)	246, 465
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	204, 700
BssECI	CCNNGG	2 cut(s)	513, 576
BssMI	GATC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	513, 576
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	65, 149
BstAUI	TGTACA	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	492, 748
BstDSI	CCRYGG	1 cut(s)	513
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	577, 591, 707
BstKTI	GATC	1 cut(s)	653
BstMAI	GTCTC	3 cut(s)	153, 496, 665
BstMBI	GATC	1 cut(s)	650
BstMCI	CGRYCG	1 cut(s)	657
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 518
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	276, 306
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	505, 521, 751
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstZI	CGGCCG	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	245, 656
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	3 cut(s)	577, 591, 707
BtsIMutI	CAGTG	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	304, 698
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	121, 274, 635
CviAII	CATG	4 cut(s)	91, 124, 181, 514
CviQI	GTAC	3 cut(s)	121, 274, 635
DdeI	CTNAG	2 cut(s)	492, 748
DpnI	GATC	1 cut(s)	652
DpnII	GATC	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	654
EagI	CGGCCG	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	65, 149
EarI	CTCTTC	2 cut(s)	65, 149
Ecl136II	GAGCTC	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	513, 576
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	496, 665
Eco47I	GGWCC	2 cut(s)	304, 698
Eco52I	CGGCCG	1 cut(s)	654
Eco53kI	GAGCTC	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	513, 576
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	513, 576
FaeI	CATG	4 cut(s)	94, 127, 184, 517
FaiI	YATR	9 cut(s)	52, 92, 125, 182, 515, 603, 647, 767, 769
FatI	CATG	4 cut(s)	90, 123, 180, 513
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	510, 519, 740
FokI	GGATG	3 cut(s)	578, 584, 694
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	510, 519, 740
GluI	GCNGC	3 cut(s)	510, 519, 740
HaeIII	GGCC	2 cut(s)	245, 656
HapII	CCGG	3 cut(s)	307, 569, 701
Hin1II	CATG	4 cut(s)	94, 127, 184, 517
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	307, 569, 701
HphI	GGTGA	4 cut(s)	25, 292, 475, 488
Hpy166II	GTNNAC	3 cut(s)	96, 121, 588
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	3 cut(s)	139, 491, 569
Hpy8I	GTNNAC	3 cut(s)	96, 121, 588
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	5 cut(s)	235, 257, 491, 605, 618
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	3 cut(s)	96, 536, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 518
HpyF3I	CTNAG	2 cut(s)	492, 748
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	94, 127, 184, 517
Kpn2I	TCCGGA	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	638
Kzo9I	GATC	1 cut(s)	650
LmnI	GCTCC	2 cut(s)	232, 431
Lsp1109I	GCAGC	3 cut(s)	505, 521, 751
LweI	GCATC	5 cut(s)	244, 320, 399, 562, 726
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	295, 544
MalI	GATC	1 cut(s)	652
MboI	GATC	1 cut(s)	650
MboII	GAAGA	2 cut(s)	82, 166
MfeI	CAATTG	2 cut(s)	36, 288
MhlI	GDGCHC	2 cut(s)	98, 287
MluCI	AATT	5 cut(s)	23, 36, 104, 288, 348
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	4, 349, 487, 532, 536
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	4 cut(s)	102, 107, 351, 395
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	3 cut(s)	307, 569, 701
MspR9I	CCNGG	2 cut(s)	278, 308
MunI	CAATTG	2 cut(s)	36, 288
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	515, 518
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	650
NlaIII	CATG	4 cut(s)	94, 127, 184, 517
NlaIV	GGNNCC	3 cut(s)	137, 305, 636
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	511, 520, 741
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	137, 305, 636
PspPI	GGNCC	2 cut(s)	304, 698
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
RsaI	GTAC	3 cut(s)	122, 275, 636
RsaNI	GTAC	3 cut(s)	121, 274, 635
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	102, 107, 351, 395
SatI	GCNGC	3 cut(s)	510, 519, 740
Sau3AI	GATC	1 cut(s)	650
Sau96I	GGNCC	2 cut(s)	304, 698
ScrFI	CCNGG	2 cut(s)	278, 308
SduI	GDGCHC	2 cut(s)	98, 287
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	5 cut(s)	244, 320, 399, 562, 726
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	304, 698
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	23, 36, 104, 288, 348
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	193
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	276, 306
StyI	CCWWGG	2 cut(s)	513, 576
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	365
TasI	AATT	5 cut(s)	23, 36, 104, 288, 348
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	4 cut(s)	102, 107, 351, 395
Tru9I	TTAA	4 cut(s)	102, 107, 351, 395
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	3 cut(s)	509, 518, 739
TspDTI	ATGAA	4 cut(s)	79, 197, 254, 336
TspRI	CASTG	1 cut(s)	700
VneI	GTGCAC	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	304, 698
XagI	CCTNNNNNAGG	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.