Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007627.1

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Reverse (-)

40555 .. 40866

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007627.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgaagttccaatctcgccaagacctcgcattgtacctagtgagcacggtgggggtcaccggagctcgtgctcgtgtgaacgaacaagttccgagtcttttgagggagattaaggataccaccagcaaggcagtcgcggttgggtttgggctgtctaagcctgaacatgtgaaacaggtggctgagtggggggctgatggcgttattgttggtagcgccattgtgaaggttctaggtgaagctagatctcctcttgaagggttgagagagcttgaaactgtcaccaagtctttcaaatctgctctccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

103

Amino Acids

11.06

Weight (kDa)

9.45

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	257, 275, 295
AluBI	AGCT	3 cut(s)	65, 242, 271
AluI	AGCT	3 cut(s)	65, 242, 271
Alw21I	GWGCWC	3 cut(s)	47, 67, 73
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	49, 248, 274
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	2 cut(s)	66, 72
Bbv12I	GWGCWC	3 cut(s)	47, 67, 73
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciVI	GTATCC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	38, 233, 243
BfoI	RGCGCY	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	137
BsiHKAI	GWGCWC	3 cut(s)	47, 67, 73
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	47, 67, 73
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	137
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	2 cut(s)	66, 72
Bst2BI	CACGAG	2 cut(s)	66, 72
Bst4CI	ACNGT	2 cut(s)	49, 280
BstDEI	CTNAG	2 cut(s)	156, 183
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	170
BstPI	GGTNACC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	65, 151, 160, 182, 194, 242, 271
CviKI_1	RGCY	7 cut(s)	65, 151, 160, 182, 194, 242, 271
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	156, 183
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	1 cut(s)	170
FaiI	YATR	1 cut(s)	168
FatI	CATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	3 cut(s)	38, 233, 243
GlaI	GCGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	219
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	49, 248, 274
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	220, 251
HpyCH4III	ACNGT	2 cut(s)	49, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	156, 183
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	73, 136, 161, 174
MaeI	CTAG	3 cut(s)	38, 233, 243
MaeIII	GTNAC	2 cut(s)	55, 280
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	3 cut(s)	47, 67, 73
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	35, 96, 261
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	55, 280
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	47, 67, 73
SetI	ASST	8 cut(s)	27, 39, 67, 180, 231, 238, 244, 273
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	38, 233, 243
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	49, 280
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	55, 280
Tsp45I	GTSAC	2 cut(s)	55, 280
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	255
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	3 cut(s)	38, 233, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.