Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Forward (+)

7613746 .. 7614204

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG047400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTCACCATTAGTCAAGCAGGTGTACGTGGGCTTGTGGTTCCGGATGTTCCTTTTGAAGAGACACAAATTTTAAGGAAGGAAGCTGCGAAAAATAAGATCGAGTTGGTGCTACTGACCACTCCAGCTACTACAACAGACCGAATGAAAGACATCGTCAAAGCTTCGGAGGGATTTGTGTACCTAGTGAGCACGGTGGGGGTCACCGGAGCTCGTGCTCATGTGAACGAACAAGTTCCGAGTCTTTTGAGGGAGATTAAGGATGCCACCAGCAAGGCAGTGGCGGTTGGGTTTGGGCTGTCTACGCCTGAACATGTGAAACAGGTGGCTGAGTGGGGGGCTGATGGCGTTATTGTTGGTAGTGCCATTGTGAAGGTTCTAGGTGAAGCTAGATCTCCTCTTGAAGGGTTGAGAGAACTTGAAACTCTCACCAAGTCTTTCAAGTCTGCTCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

152

Amino Acids

16.27

Weight (kDa)

6.85

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	4 - 151	1.2e-46	Tryptophan synthase alpha chain
His_biosynth	PF00977	66 - 125	8.4e-06	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	2 cut(s)	27, 182
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	59, 404, 422, 442
AluBI	AGCT	5 cut(s)	86, 128, 164, 212, 389
AluI	AGCT	5 cut(s)	86, 128, 164, 212, 389
Alw21I	GWGCWC	3 cut(s)	194, 214, 220
Alw26I	GTCTC	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	196, 395, 421
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	3 cut(s)	194, 214, 220
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	3 cut(s)	185, 380, 390
BfuAI	ACCTGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	29
BsaWI	WCCGGW	2 cut(s)	43, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	43
BseGI	GGATG	2 cut(s)	52, 268
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	73
BsiHKAI	GWGCWC	3 cut(s)	194, 214, 220
BsiSI	CCGG	2 cut(s)	44, 207
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	194, 214, 220
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	99, 392
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	11
BssMI	GATC	2 cut(s)	99, 392
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	52, 268
BstKTI	GATC	2 cut(s)	102, 395
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	99, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	317
BstPI	GGTNACC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	52, 268
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	26, 181
CviAII	CATG	2 cut(s)	221, 314
CviJI	RGCY	9 cut(s)	34, 86, 128, 164, 212, 298, 329, 341, 389
CviKI_1	RGCY	9 cut(s)	34, 86, 128, 164, 212, 298, 329, 341, 389
CviQI	GTAC	2 cut(s)	26, 181
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	101, 394
DpnII	GATC	2 cut(s)	99, 392
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	214
FaeI	CATG	2 cut(s)	224, 317
FaiI	YATR	2 cut(s)	222, 315
FatI	CATG	2 cut(s)	220, 313
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	59, 275
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	3 cut(s)	185, 380, 390
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	2 cut(s)	44, 207
Hin1II	CATG	2 cut(s)	224, 317
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	44, 207
HphI	GGTGA	3 cut(s)	196, 395, 421
Hpy166II	GTNNAC	5 cut(s)	6, 26, 181, 226, 303
Hpy188I	TCNGA	2 cut(s)	169, 240
Hpy188III	TCNNGA	2 cut(s)	44, 401
Hpy8I	GTNNAC	5 cut(s)	6, 26, 181, 226, 303
HpyAV	CCTTC	3 cut(s)	73, 367, 398
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	224, 317
Kpn2I	TCCGGA	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	99, 392
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	6, 57, 138, 220, 283, 308, 321
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	185, 380, 390
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	101, 394
MboI	GATC	2 cut(s)	99, 392
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	3 cut(s)	194, 214, 220
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	163, 243, 408
MroI	TCCGGA	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	74, 258
MspI	CCGG	2 cut(s)	44, 207
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	2 cut(s)	99, 392
NlaIII	CATG	2 cut(s)	224, 317
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	11
PciI	ACATGT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	234
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	29
PscI	ACATGT	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	2 cut(s)	27, 182
RsaNI	GTAC	2 cut(s)	26, 181
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	74, 258
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	99, 392
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	3 cut(s)	194, 214, 220
SfaNI	GCATC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	185, 380, 390
SstI	GAGCTC	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	74, 258
Tru9I	TTAA	2 cut(s)	74, 258
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	285
Tth111I	GACNNNGTC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	185, 380, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.