Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007627.1

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Reverse (-)

41279 .. 41554

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007627.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ctagtgagcacggtgggggtcaccggagctcgtgctcgtgtgaacgaacaagttccgagtcttttgagggagattaaggatgccaccagcaaggcagtcgcggttgggtttgggctgtctaagcctgaacatgtgaaacaagtggctgagtggggggctgatggcgttattgttggtagtgccattgtgaaggttctaggtgaagctagatctcctcttgaagggttgagagagcttgaaactgtcaccaagtctttcaagtctgctctccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

91

Amino Acids

9.55

Weight (kDa)

9.23

Isoelectric Point (pI)

15.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	221, 239, 259
AluBI	AGCT	3 cut(s)	29, 206, 235
AluI	AGCT	3 cut(s)	29, 206, 235
Alw21I	GWGCWC	3 cut(s)	11, 31, 37
Asp700I	GAANNNNTTC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	13, 212, 238
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	2 cut(s)	30, 36
Bbv12I	GWGCWC	3 cut(s)	11, 31, 37
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BfaI	CTAG	3 cut(s)	2, 197, 207
BglII	AGATCT	1 cut(s)	209
BmsI	GCATC	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	11, 31, 37
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	11, 31, 37
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	101
BssMI	GATC	1 cut(s)	209
BssSI	CACGAG	2 cut(s)	30, 36
Bst2BI	CACGAG	2 cut(s)	30, 36
Bst4CI	ACNGT	2 cut(s)	13, 244
BstDEI	CTNAG	2 cut(s)	120, 147
BstEII	GGTNACC	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	85
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	7 cut(s)	29, 115, 124, 146, 158, 206, 235
CviKI_1	RGCY	7 cut(s)	29, 115, 124, 146, 158, 206, 235
DdeI	CTNAG	2 cut(s)	120, 147
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	1 cut(s)	134
FaiI	YATR	1 cut(s)	132
FatI	CATG	1 cut(s)	130
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	31
FspBI	CTAG	3 cut(s)	2, 197, 207
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	3 cut(s)	13, 212, 238
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	184, 215
HpyCH4III	ACNGT	2 cut(s)	13, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	120, 147
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	3 cut(s)	37, 100, 138
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	2, 197, 207
MaeIII	GTNAC	2 cut(s)	19, 244
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	3 cut(s)	11, 31, 37
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	60, 225
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	2 cut(s)	19, 244
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	11, 31, 37
SetI	ASST	5 cut(s)	31, 195, 202, 208, 237
SfaNI	GCATC	1 cut(s)	70
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	3 cut(s)	2, 197, 207
SstI	GAGCTC	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	13, 244
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	19, 244
Tsp45I	GTSAC	2 cut(s)	19, 244
XagI	CCTNNNNNAGG	1 cut(s)	219
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	3 cut(s)	2, 197, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.